View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_33 (Length: 207)
Name: NF18526_low_33
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 30219711 - 30219783
Alignment:
| Q |
122 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtg |
194 |
Q |
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| T |
30219711 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtg |
30219783 |
T |
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Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30219601 - 30219670
Alignment:
| Q |
18 |
aatatcaaggggacttggctttttgtagccaagtgtcagatttcgaagtaccaaatataaaaatctcttg |
87 |
Q |
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| T |
30219601 |
aatatcaaggggacttggctttttgtagccaagtgtcagattttgaagtaccaaatataaaaatctcttg |
30219670 |
T |
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Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 30049253 - 30049181
Alignment:
| Q |
122 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtg |
194 |
Q |
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| T |
30049253 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtg |
30049181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 30063594 - 30063522
Alignment:
| Q |
122 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtg |
194 |
Q |
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| T |
30063594 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtg |
30063522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 30033153 - 30033082
Alignment:
| Q |
122 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgt |
193 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
30033153 |
cataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgt |
30033082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 30229364 - 30229292
Alignment:
| Q |
122 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtg |
194 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
30229364 |
cataatggacaaattctttggagaagttcaagagccagtgagtcctcatggacaatatttcaacagctctgtg |
30229292 |
T |
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