View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_34 (Length: 207)
Name: NF18526_low_34
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 2361681 - 2361499
Alignment:
| Q |
10 |
agaagcatagggtgctaacacaaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgctaagtcaatttttgtg |
109 |
Q |
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| T |
2361681 |
agaaccatagggtgctaacgcaaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgccaagtcaatttttgtg |
2361582 |
T |
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| Q |
110 |
aaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2361581 |
aaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
2361499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 2366231 - 2366103
Alignment:
| Q |
64 |
tgcttcaagtttagggcgattggatattgctaagtcaatttttgtgaaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaacca |
163 |
Q |
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| T |
2366231 |
tgcttcacctttagggcgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgctaagaaccaaagcacgtttggaacca |
2366132 |
T |
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| Q |
164 |
agcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2366131 |
atcttaatagtgaacaagggtccatattt |
2366103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 2355976 - 2355816
Alignment:
| Q |
32 |
aacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgctaagtcaatttttgtgaaacattcctttgccatttccc |
131 |
Q |
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| T |
2355976 |
aacatggctccattgtaagccaaatgttcagttgcaacaagtttaggacgagtggaaattgcaacgtcaaatttggtgaaacattccttcgccatttccg |
2355877 |
T |
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| Q |
132 |
aattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2355876 |
aattgctaagtaccaaagcatttttggaaccaagtttgatggtgaacaagggtccatattt |
2355816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 2305877 - 2305795
Alignment:
| Q |
110 |
aaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2305877 |
aaacattccttggccatttcccaattgttgagaattaaagcacgtttagaaccaagcttgatggtgaataatggtccatattt |
2305795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 2349250 - 2349165
Alignment:
| Q |
107 |
gtgaaacattcctttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2349250 |
gtgaaacattccttggcaatttcccaattgttaagtattaaagcatgtttagaaccaagcttgatagtgaatattggtccatattt |
2349165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 2264031 - 2264104
Alignment:
| Q |
119 |
tttgccatttcccaattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatattt |
192 |
Q |
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| T |
2264031 |
tttgccatttcccaattgcttagtaccaaagcacgatttgtaccaagttttatggtgaataggggtccatattt |
2264104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 4303422 - 4303263
Alignment:
| Q |
31 |
aaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgctaagtcaatttttgtgaaacattcctttgccatttcc |
130 |
Q |
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||||||||| ||||||||| || ||||||||||| ||||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
4303422 |
aaacatggctccattgtaagtcatatgttgagttgtttcaagtgtagggcgatcggaaattgccaagtcaattttggtgaaacattcctcagccatttcc |
4303323 |
T |
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| Q |
131 |
caattgctaacaaccaaagcacgtttggaaccaagcttaatagtgaacaagggtccatat |
190 |
Q |
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| T |
4303322 |
caattacttagcaccaaagcatttctcgaaccaagtttgattgtgaataaaggtccatat |
4303263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 41340206 - 41340088
Alignment:
| Q |
31 |
aaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgctaagtcaatttttgtgaaacattcctttgccatttcc |
130 |
Q |
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||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||| || | ||| ||||||| ||| || |||||||||| ||||||||| |
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| T |
41340206 |
aaacatggctccattgtaagccaaatgtttagttacttcaagtttagggcgatttgaaactgccaagtcaactttggtaaaacattcctcagccatttcc |
41340107 |
T |
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| Q |
131 |
caattgctaacaaccaaag |
149 |
Q |
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|||||||||| ||||||| |
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| T |
41340106 |
caattgctaagcaccaaag |
41340088 |
T |
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