View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18526_low_8 (Length: 392)
Name: NF18526_low_8
Description: NF18526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18526_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 43852669 - 43853048
Alignment:
| Q |
1 |
aataaagtgaaaacaacttgaaataagatcatatatattcttaatctcttcttgnnnnnnnnnn----aaaaaagaacaaggaagatgaaagtttttatt |
96 |
Q |
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| T |
43852669 |
aataaagtgaaaacaacttgaaataagatcatatatattcttaatctcttttttttttttttattttaaaaaaagaacatggaagatgaaagtttttatt |
43852768 |
T |
|
| Q |
97 |
agtcgaagtgacactaattaatgacaattatataacctccttccagggatttaaatttcgtctcttgagattatattgtgacactattacctcccaaatg |
196 |
Q |
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| T |
43852769 |
agtcgaagtgacactaattaatgacaattatataacctccctccagggatttaaatttcgtctcttgagattatattgtgacactattacctcccaaatg |
43852868 |
T |
|
| Q |
197 |
aattgaatgacgaatcgttcaggagaatctaagtttgattcctggatgaacatttcttagtcaaaacttacttatctcctgaccaaactttggattatca |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43852869 |
aattgaatgacgaatcgttcaggagaatctaagtttgattcctggatgaacattttttagtcaaaacttacttatcttctgaccaaactttggattatca |
43852968 |
T |
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| Q |
297 |
ggacctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaagg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43852969 |
ggacctctttcccattaggaccgaagggttaacacaaaaaataattgtgaaactattaccactaatttgacatctcaagg |
43853048 |
T |
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