View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_high_16 (Length: 375)
Name: NF18527_high_16
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 41485776 - 41485424
Alignment:
| Q |
1 |
atgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagacatacat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41485776 |
atgttagtgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaa-ttctgtagacatacat |
41485684 |
T |
|
| Q |
101 |
aatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgccttcaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485683 |
aatgacagaattttgtacattagcacattttcacagggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgccttcaataa |
41485584 |
T |
|
| Q |
201 |
ctttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtcaatctac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485583 |
ctttccatcgtattgcagtatctatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtcaatctac |
41485484 |
T |
|
| Q |
301 |
tgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaat |
360 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
41485483 |
tgttaaatcgttaattgttgtttccaacacttcaccataataaacatagcaagtagaaat |
41485424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41482495 - 41482263
Alignment:
| Q |
1 |
atgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagacatacat |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41482495 |
atgttactgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaaattctgtagacatacat |
41482402 |
T |
|
| Q |
101 |
aatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaagg------tattacta-ttgttgcct |
193 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| | ||||| |||||||| | ||| ||| |
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| T |
41482401 |
aatgacagaattttgtacattagcacatattcacagggtttcttgtataacccttccttttctatatcaatgaaggccatactattactactggtttcct |
41482302 |
T |
|
| Q |
194 |
tcaataactttccatcgtattgcagtatctatatagcct |
232 |
Q |
| |
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|||||||||||||||| || ||||||| |||||||||| |
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| T |
41482301 |
tcaataactttccatcctactgcagtaggtatatagcct |
41482263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 260 - 360
Target Start/End: Complemental strand, 41482258 - 41482158
Alignment:
| Q |
260 |
caacttggttctctaatatgtaataaatattgtcaatctactgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaa |
359 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41482258 |
caacttagttctctaatatgtaatagatattgtcaatctactgttaaatcgttaattgttgtttcccacacttcaccacaataaacatagcaagtagaaa |
41482159 |
T |
|
| Q |
360 |
t |
360 |
Q |
| |
|
| |
|
|
| T |
41482158 |
t |
41482158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 45385559 - 45385694
Alignment:
| Q |
223 |
tatatagcctccatggttgatgttcttgggattaaatcaacttggttctctaatatgtaataaatattgtcaatctactgttaaatcgttaattgttgtt |
322 |
Q |
| |
|
|||||| |||||||||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||| |
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| T |
45385559 |
tatatatcctccatggtcgatgtctctggcatcaaatcaacttggttctctaatatgta-taaatattgtcaatccactgttaaatcgttaattgctgtt |
45385657 |
T |
|
| Q |
323 |
tcccacacttcaccacaataaacatagcaagtagaaat |
360 |
Q |
| |
|
||||||| ||||||| ||| |||| ||||||||||||| |
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| T |
45385658 |
tcccacatttcaccagaat-aacaaagcaagtagaaat |
45385694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 20434878 - 20434953
Alignment:
| Q |
91 |
agacatacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatat |
167 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||| |
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| T |
20434878 |
agacatacacaatgacagaattttgtacattagcacattgtcacatgg-ttcttgtatcacccttctttttctatat |
20434953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 20434495 - 20434532
Alignment:
| Q |
323 |
tcccacacttcaccacaataaacatagcaagtagaaat |
360 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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|
| T |
20434495 |
tcccacacttcaggacaataaacatagcaagtagaaat |
20434532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 5736243 - 5736288
Alignment:
| Q |
315 |
ttgttgtttcccacacttcaccacaataaacatagcaagtagaaat |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
5736243 |
ttgttgtttcccacacttcaccacaattaacatggcaagtagaaat |
5736288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 5773355 - 5773400
Alignment:
| Q |
315 |
ttgttgtttcccacacttcaccacaataaacatagcaagtagaaat |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
5773355 |
ttgttgtttcccacacttcaccacaattaacatggcaagtagaaat |
5773400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 5697587 - 5697633
Alignment:
| Q |
312 |
taattgttgtttcccacacttcaccacaataaacatagcaagtagaa |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
5697587 |
taattgttgtttcccacactttaccacaattaacatggcaagtagaa |
5697633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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