View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18527_high_18 (Length: 357)

Name: NF18527_high_18
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18527_high_18
NF18527_high_18
[»] chr2 (14 HSPs)
chr2 (13-357)||(8403782-8404123)
chr2 (294-348)||(8411867-8411921)
chr2 (294-348)||(8433965-8434019)
chr2 (283-348)||(8368118-8368183)
chr2 (283-348)||(8401227-8401292)
chr2 (283-348)||(8422804-8422869)
chr2 (296-348)||(8376087-8376139)
chr2 (296-348)||(8431018-8431070)
chr2 (280-339)||(8459649-8459708)
chr2 (295-344)||(8416952-8417001)
chr2 (116-152)||(8368314-8368350)
chr2 (116-152)||(8401060-8401096)
chr2 (116-152)||(8422637-8422673)
chr2 (318-354)||(8429640-8429676)
[»] chr4 (1 HSPs)
chr4 (303-357)||(55336097-55336151)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 8404123 - 8403782
Alignment:
Q  13 aagaaaattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaagatgaaatgaatgaggtaattgaag 112  Q
    |||||||| ||| ||| ||||| ||||||||||||||||   ||| | |||||||| ||||||||||| |||||| |||||||||| |||||||||||||    
T  8404123 aagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaag 8404027  T
Q  113 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  8404026 tggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaat 8403927  T
Q  213 tgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403926 tgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat 8403827  T
Q  313 gtaggacaagttggtatggtgtttgagatgtatagaaactgtggt 357  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  8403826 ggaggacaagttggtatggtgtttgagatgtatagaaactgtggt 8403782  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  294 tgttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  294 tgttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 8368183 - 8368118
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||| |||| ||||||| ||||||||||||  ||||||||||||||||| | ||| |||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8368118  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 8401227 - 8401292
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||| |||| ||||||| ||||||||||||  ||||||||||||||||| | ||| |||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8401292  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 8422804 - 8422869
Alignment:
Q  283 ttggcaactgttgttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||| |||| ||||||| ||||||||||||  ||||||||||||||||| | ||| |||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtataga 8422869  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  296 ttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  296 ttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgtataga 348  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  280 gctttggcaactgttgttaatacttttgagcatgtaggacaagttggtatggtgtttgag 339  Q
    |||||||||||||||||||| || || || |||| ||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  295 gttaatacttttgagcatgtaggacaagttggtatggtgtttgagatgta 344  Q
    |||||||||||||||||||  ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8368350 tgaagagaaaagatatggaagattatgagagattagg 8368314  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8401060 tgaagagaaaagatatggaagattatgagagattagg 8401096  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
Q  116 tgaagagaaaagatattgaggattatgagagattagg 152  Q
    |||||||||||||||| || |||||||||||||||||    
T  8422637 tgaagagaaaagatatggaagattatgagagattagg 8422673  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 8429676 - 8429640
Alignment:
Q  318 acaagttggtatggtgtttgagatgtatagaaactgt 354  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgt 8429640  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 55336151 - 55336097
Alignment:
Q  303 ttttgagcatgtaggacaagttggtatggtgtttgagatgtatagaaactgtggt 357  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggt 55336097  T

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