View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_high_2 (Length: 567)
Name: NF18527_high_2
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Original strand, 10385325 - 10385864
Alignment:
| Q |
9 |
gcagaacctgtgatattagttaaaagattaattatactaatttttaagggnnnnnnnttaacatttttgtagcaagagctggggagaatgactttcatgc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10385325 |
gcagcacctgtgatattagttaaaagattaattatactaatttttaagggaaaaaaattaacatttttgtagtaagagctggggagaatgactttcatgc |
10385424 |
T |
|
| Q |
109 |
atattgagtaagttgagataccaataaaccatagtgctattaaaaataagtattatttttaatttattgatattgtcaagtgataaatatttttgcagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10385425 |
atattgagtaagttgagataccaataaaccatagtgctattaaaaataagtattatttttaatttattgatattgtcaagtgataaatatttttgcagaa |
10385524 |
T |
|
| Q |
209 |
agtacctttaacaagtctaatcacaattacttattcacatgggtatgag-ttgagtgatgaaattggctttggtgttcatctcagaaaacagatgacaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10385525 |
agtacctttaacaagtctaatcacaattacttattcacatgggtatgagtttgagtgatgaaattggctttggtgttcatctcagaaaacagatgacaaa |
10385624 |
T |
|
| Q |
308 |
gacatgcaactgtaatgtgcactatcatatacttttaaccaatgaataagctttgcatagctctcagtagctagattaagaacaatagtgcttcctttga |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10385625 |
gacatgcaactgtaatgtgcactatcatatacttttaaccaatgaataagctttgcatagctctcagtaactagattaagaacaatagtgcttcctttga |
10385724 |
T |
|
| Q |
408 |
ttgtaaagcagcaacctcatctttttccttgcatatcccttctgggcataagatcagatatattgccagcatgttagttccagtgtcacatttcataaac |
507 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10385725 |
ttgtaaagcagcaacctcatctttttccttgc-tatcccttctgggcataagatcagatatattgccagcatgttagttccagtgtcacatttcatcaac |
10385823 |
T |
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| Q |
508 |
gcgtttactacaatgaatcaccataatatgtcatccaaaaa |
548 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |
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| T |
10385824 |
gcatttactacaatgaatcaccataatatgtcatccaaaaa |
10385864 |
T |
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