View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_high_20 (Length: 310)
Name: NF18527_high_20
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 45037491 - 45037215
Alignment:
| Q |
15 |
aaatttattcacacaatcaataaatcaaaatatgcattccattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
114 |
Q |
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| T |
45037491 |
aaatttattcacacaatcaataaatcaaaatatgcattgcattacttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcagg |
45037392 |
T |
|
| Q |
115 |
atgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
214 |
Q |
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| T |
45037391 |
gtgacgccataacatagcaagaacaagattgtaaacaaatgggattggcttataaatatccttgaaatacatattcaagaaatcttgttcagcaaaagga |
45037292 |
T |
|
| Q |
215 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagc |
291 |
Q |
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| T |
45037291 |
gtaggaggagtaactttaagtgtcttcaaaagatcgtggtaagtatcaatgcttggctcaaacaggaacatgccagc |
45037215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 45944023 - 45944147
Alignment:
| Q |
68 |
gcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggattggcttat |
167 |
Q |
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| T |
45944023 |
gcacaatagtgaacaacttgaactttctcaagctcaacattctcaggatgacgccacatcatggccaacacaagattgtacacattaggtataggcttgt |
45944122 |
T |
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| Q |
168 |
aaatatccttgaaatacatattcaa |
192 |
Q |
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| T |
45944123 |
atttatccttgaaatacatgttcaa |
45944147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 20395365 - 20395224
Alignment:
| Q |
58 |
acttaccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatggg |
157 |
Q |
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||||||||||||||| || |||||||| |||||||| | ||| |||||||| |||||||||||||| ||||| || || |||||||||||||| ||| |
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| T |
20395365 |
acttaccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcaggatgacgccacaacatggccagcacaagattgtaaacattaggg |
20395266 |
T |
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| Q |
158 |
attggcttataaatatccttgaaatacatattcaagaaatct |
199 |
Q |
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| T |
20395265 |
ataggcttatatttatcattgaaatacatattcaaaaaatct |
20395224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 37686915 - 37687052
Alignment:
| Q |
61 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
160 |
Q |
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|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37686915 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37687014 |
T |
|
| Q |
161 |
ggcttataaatatccttgaaatacatattcaagaaatc |
198 |
Q |
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| T |
37687015 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37687052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 198
Target Start/End: Complemental strand, 37698603 - 37698466
Alignment:
| Q |
61 |
taccgctgcacaatagtgaacaaccttgactttatgaagctcaacattttcaggatgacgccataacatagcaagaacaagattgtaaaccaatgggatt |
160 |
Q |
| |
|
|||||||||||| || |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| || | |||||||| ||||| ||| ||| |
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| T |
37698603 |
taccgctgcacagtaatgaacaactttgactttctcaagttcaacattctcagggtgacgccacaacatggccaacacaagattataaacatttggaatt |
37698504 |
T |
|
| Q |
161 |
ggcttataaatatccttgaaatacatattcaagaaatc |
198 |
Q |
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|||||||| | || |||||||| || ||||| ||||| |
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| T |
37698503 |
ggcttatatttgtctttgaaatatatgttcaaaaaatc |
37698466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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