View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18527_high_21 (Length: 304)

Name: NF18527_high_21
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18527_high_21
NF18527_high_21
[»] chr8 (17 HSPs)
chr8 (152-285)||(27775971-27776102)
chr8 (11-85)||(16011899-16011973)
chr8 (11-84)||(27776169-27776242)
chr8 (11-60)||(12490754-12490803)
chr8 (42-74)||(157082-157114)
chr8 (13-60)||(11114653-11114700)
chr8 (13-60)||(24946042-24946089)
chr8 (19-74)||(45405809-45405864)
chr8 (8-50)||(3207392-3207434)
chr8 (13-59)||(7325756-7325802)
chr8 (13-59)||(32674216-32674262)
chr8 (13-74)||(5502386-5502447)
chr8 (25-66)||(10592276-10592317)
chr8 (13-74)||(36675351-36675412)
chr8 (19-60)||(36740354-36740395)
chr8 (14-59)||(37784359-37784404)
chr8 (25-65)||(16699564-16699604)
[»] chr3 (16 HSPs)
chr3 (11-59)||(25559745-25559793)
chr3 (17-60)||(20096408-20096451)
chr3 (11-59)||(9557904-9557952)
chr3 (13-60)||(7294083-7294130)
chr3 (11-54)||(34208313-34208356)
chr3 (14-68)||(1765425-1765479)
chr3 (25-59)||(42643276-42643310)
chr3 (13-74)||(29846875-29846936)
chr3 (14-59)||(38296647-38296692)
chr3 (13-73)||(38692308-38692366)
chr3 (19-59)||(28300638-28300678)
chr3 (25-81)||(30580141-30580197)
chr3 (11-59)||(38471683-38471731)
chr3 (14-66)||(45293013-45293065)
chr3 (42-74)||(47683816-47683848)
chr3 (13-85)||(52431184-52431256)
[»] chr5 (10 HSPs)
chr5 (11-60)||(1774265-1774314)
chr5 (13-60)||(7766013-7766060)
chr5 (13-60)||(12718364-12718411)
chr5 (13-60)||(17990254-17990301)
chr5 (13-59)||(4985610-4985656)
chr5 (13-59)||(34952390-34952436)
chr5 (21-74)||(31284386-31284439)
chr5 (42-74)||(372733-372765)
chr5 (15-59)||(29765871-29765915)
chr5 (25-57)||(31683491-31683523)
[»] chr1 (21 HSPs)
chr1 (11-60)||(1156519-1156568)
chr1 (11-74)||(27687501-27687564)
chr1 (19-74)||(46903496-46903551)
chr1 (13-74)||(40139141-40139202)
chr1 (25-85)||(1690450-1690510)
chr1 (14-74)||(43757614-43757674)
chr1 (13-60)||(29632474-29632521)
chr1 (13-59)||(2827694-2827740)
chr1 (11-60)||(578844-578893)
chr1 (14-59)||(835912-835957)
chr1 (11-60)||(11068465-11068514)
chr1 (14-59)||(11897215-11897260)
chr1 (11-56)||(27787533-27787578)
chr1 (11-60)||(30530556-30530605)
chr1 (13-74)||(40596038-40596099)
chr1 (29-74)||(41507194-41507239)
chr1 (13-74)||(41558019-41558080)
chr1 (19-60)||(45470830-45470871)
chr1 (19-60)||(47113314-47113355)
chr1 (13-74)||(49453506-49453567)
chr1 (14-74)||(5477148-5477208)
[»] chr2 (20 HSPs)
chr2 (11-59)||(44059707-44059755)
chr2 (13-59)||(6328708-6328754)
chr2 (21-74)||(24727441-24727494)
chr2 (19-60)||(43650539-43650580)
chr2 (21-81)||(9834073-9834133)
chr2 (19-59)||(25094393-25094433)
chr2 (11-59)||(40721812-40721860)
chr2 (23-74)||(1095830-1095881)
chr2 (13-60)||(43725245-43725292)
chr2 (14-60)||(12962426-12962472)
chr2 (17-59)||(13850172-13850214)
chr2 (13-59)||(37085205-37085251)
chr2 (19-68)||(285459-285508)
chr2 (14-59)||(20247852-20247897)
chr2 (11-60)||(29507770-29507819)
chr2 (13-74)||(45202116-45202177)
chr2 (14-66)||(18737858-18737910)
chr2 (19-59)||(34373046-34373086)
chr2 (14-66)||(40210052-40210104)
chr2 (13-57)||(42251904-42251948)
[»] chr7 (9 HSPs)
chr7 (19-59)||(35212945-35212985)
chr7 (13-60)||(155965-156012)
chr7 (13-74)||(25887609-25887670)
chr7 (19-60)||(41815185-41815226)
chr7 (19-59)||(28548211-28548251)
chr7 (19-59)||(37969972-37970012)
chr7 (11-59)||(39533367-39533415)
chr7 (19-59)||(41458890-41458930)
chr7 (19-59)||(42552941-42552981)
[»] chr4 (17 HSPs)
chr4 (14-74)||(27384202-27384262)
chr4 (11-59)||(41609661-41609709)
chr4 (19-67)||(45761234-45761282)
chr4 (39-74)||(32365677-32365712)
chr4 (19-74)||(37731941-37731996)
chr4 (24-67)||(40590634-40590677)
chr4 (14-60)||(1031795-1031841)
chr4 (13-59)||(34537971-34538017)
chr4 (19-60)||(149277-149318)
chr4 (23-60)||(5466489-5466526)
chr4 (19-60)||(12241098-12241139)
chr4 (19-60)||(33820326-33820367)
chr4 (21-74)||(46686260-46686312)
chr4 (11-60)||(48722109-48722158)
chr4 (11-60)||(53763793-53763842)
chr4 (13-53)||(35037656-35037696)
chr4 (11-59)||(53662410-53662458)
[»] chr6 (3 HSPs)
chr6 (13-59)||(3049514-3049560)
chr6 (11-59)||(27175998-27176046)
chr6 (21-85)||(32149504-32149568)
[»] scaffold0003 (1 HSPs)
scaffold0003 (26-66)||(366328-366368)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 27776102 - 27775971
Alignment:
Q  152 ttatttctctcaatttatcgtagaggagagatgtagttaatattgttaaattcatatttacttatttccttgggttaaaactcaagacctccatgtcctt 251  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||| ||       
T  27776102 ttatttctctcaatttatcatagaggagagatgtagttaatattgttaaattaatatttacttatttccttcagttaaaactcaggacctccatctc--a 27776005  T
Q  252 taacattttattcaaactatttaagctactcata 285  Q
    ||||||||||||||| ||||||||||||||||||    
T  27776004 taacattttattcaatctatttaagctactcata 27775971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 16011899 - 16011973
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatattatt 85  Q
    ||||||| |||||||||||| |||||  |||||||||||||||| ||||| |||| |||||||| | ||||||||    
T  16011899 atgaagagagagaataaaaatataatgtgaatatgagagagaaatttgtcacaaagtggttgtacaaatattatt 16011973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 27776242 - 27776169
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatattat 84  Q
    ||||||||||| ||||||||||||||  || ||||| ||||||| ||||||||||||| || || |||||||||    
T  27776242 atgaagaaagataataaaaacataatgtgagtatgaaagagaaaattgtcgcaaaatgattatacagatattat 27776169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 12490754 - 12490803
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||||||||||||  || |||||||||||||||||||    
T  12490754 atgaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 12490803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 157114 - 157082
Alignment:
Q  42 tatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||||||||||||||||||||||||||||||||    
T  157114 tatgagagagaaagttgtcgcaaaatggttgta 157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 11114653 - 11114700
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||| ||||||||||||||  ||||||||||||||||||||||    
T  11114653 gaagagagaaaataaaaacataatgtgaatatgagagagaaagttgtc 11114700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 24946089 - 24946042
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  24946089 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 24946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 45405809 - 45405864
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||||  || ||||||||| ||||||||  |||||||||||||    
T  45405809 agagaataaaaacataatgtgagtatgagagaaaaagttgtatcaaaatggttgta 45405864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 3207392 - 3207434
Alignment:
Q  8 gagatgaagaaagagaataaaaacataataggaatatgagaga 50  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||    
T  3207392 gagaggaagaaagagaataagaacataatatgaatatgagaga 3207434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 7325802 - 7325756
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  7325802 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 7325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 32674216 - 32674262
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  32674216 gaagatagagaataaaaacataatgtgagtatgagagagaaagttgt 32674262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 5502447 - 5502386
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| ||||||||| |  |||||  |||||||||||||||||||||| |||| ||||||||    
T  5502447 gaagagagagaataagataataatgtgaatatgagagagaaagttgtcacaaagtggttgta 5502386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 10592276 - 10592317
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagttgtcgcaaaa 66  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  10592276 taaaaacataatataaatatgagagagaaagttgtcacaaaa 10592317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 36675412 - 36675351
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| ||||||||| ||||||||| || ||||||||| ||||||||   ||||||||||||    
T  36675412 gaagagagagaataataacataatatgagtatgagagaaaaagttgtacaaaaatggttgta 36675351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 36740395 - 36740354
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  36740395 agagaataaaaatataatatgaatatgagagggaaagttgtc 36740354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 37784359 - 37784404
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    |||| ||||||||||||||||||| || ||||||||||||| ||||    
T  37784359 aagagagagaataaaaacataatatgagtatgagagagaaaattgt 37784404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 16699564 - 16699604
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagttgtcgcaaa 65  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  16699564 taaaaacataatatgagtatgagagagaaagttgtctcaaa 16699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 25559793 - 25559745
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  25559793 atgaagatagagaataaaaacataatatgaatatgagagagaaagttgt 25559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 20096408 - 20096451
Alignment:
Q  17 aaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  20096408 aaagagaataaaaacataatatgaatatgagagagaaagttgtc 20096451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 9557904 - 9557952
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| ||||||||||||||||||  || ||||||||||||||||||    
T  9557904 atgaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 9557952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 7294083 - 7294130
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  7294083 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 7294130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 34208356 - 34208313
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaa 54  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||    
T  34208356 atgaagagagagaataaaaacataatatgaatatgaaagagaaa 34208313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 1765479 - 1765425
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatg 68  Q
    |||| ||||||||||||||||||  |  ||||||||||||||||||| |||||||    
T  1765479 aagagagagaataaaaacataatgtgcgtatgagagagaaagttgtcacaaaatg 1765425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 42643310 - 42643276
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||| |||||||||||||||||||||    
T  42643310 taaaaacataatatgaatatgagagagaaagttgt 42643276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 29846875 - 29846936
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||| || |||||  || ||||||||||||||||||   ||||||||||||    
T  29846875 gaagaaagagaataagaatataatgtgagtatgagagagaaagttgtacaaaaatggttgta 29846936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 38296647 - 38296692
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    |||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  38296647 aagagagaaaataaaaacataatatgaatatgagagagaaaattgt 38296692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 38692308 - 38692366
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgt 73  Q
    ||||| ||||||||||||||||||  || ||||||||||  ||||||| ||||||||||||    
T  38692308 gaagagagagaataaaaacataatgtgagtatgagagag--agttgtcacaaaatggttgt 38692366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28300638 - 28300678
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  28300638 agagaataaaagtataatatgaatatgagagagaaagttgt 28300678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 30580197 - 30580141
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatat 81  Q
    ||||||||||||| || ||||| ||| |||||||||  |||||||||||||| ||||    
T  30580197 taaaaacataatatgagtatgaaagataaagttgtcataaaatggttgtataaatat 30580141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 38471731 - 38471683
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| ||||||||||||||||||  || ||||||||||||| ||||    
T  38471731 atgaagagagagaataaaaacataatgtgagtatgagagagaaaattgt 38471683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 45293013 - 45293065
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaa 66  Q
    |||| |||||||||||| |||||  || ||||||||||||||||||| |||||    
T  45293013 aagagagagaataaaaatataatgtgagtatgagagagaaagttgtcacaaaa 45293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 47683848 - 47683816
Alignment:
Q  42 tatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||||| |||||||||||||    
T  47683848 tatgagagagaaagttgtcacaaaatggttgta 47683816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 52431184 - 52431256
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatattatt 85  Q
    ||||| ||||||||| |  |||||  ||||||||||||||||||| ||  |||||| ||||||| ||||||||    
T  52431184 gaagagagagaataagagaataatgtgaatatgagagagaaagttatcataaaatgattgtataaatattatt 52431256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 1774265 - 1774314
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  1774265 atgaagagagagaataaaaacataatatgagtatgagagagaaagttgtc 1774314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 7766060 - 7766013
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||||||||| ||||||  | |||||||||||||||||||    
T  7766060 gaagaaagagaataaaaatataatataagtatgagagagaaagttgtc 7766013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 12718364 - 12718411
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  |||||||||||| |||||||||    
T  12718364 gaagagagagaataaaaacataatgtgaatatgagagataaagttgtc 12718411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 17990301 - 17990254
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  17990301 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 17990254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 4985656 - 4985610
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||| || ||||||||||||| ||||    
T  4985656 gaagagagagaataaaaacataatatgagtatgagagagaaaattgt 4985610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34952390 - 34952436
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||||    
T  34952390 gaagagagagaataaaaatataatgtgaatatgagagagaaagttgt 34952436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 31284386 - 31284439
Alignment:
Q  21 agaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||||||||  |||||| || ||||||||||||||||||| |||||||| ||||    
T  31284386 agaataaaaggataatatgagtatgagagagaaagttgtcacaaaatggatgta 31284439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 372733 - 372765
Alignment:
Q  42 tatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||||| |||||||||||||    
T  372733 tatgagagagaaagttgtcacaaaatggttgta 372765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 29765915 - 29765871
Alignment:
Q  15 agaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||||||  || | ||||||||||||||||    
T  29765915 agaaagagaataaaaacataatgtgagtgtgagagagaaagttgt 29765871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 31683491 - 31683523
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagtt 57  Q
    ||||||||||||| |||||||||||||||||||    
T  31683491 taaaaacataatatgaatatgagagagaaagtt 31683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1156568 - 1156519
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  1156568 atgaagagagagaataaaaacataatgtgaatatgagagagaaagttgtc 1156519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 27687501 - 27687564
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||| |||||||||||| |||||  || ||||||||| ||||||||| |||||||||||||    
T  27687501 atgaagagagagaataaaaatataatgtgagtatgagagataaagttgtcacaaaatggttgta 27687564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 46903551 - 46903496
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||||  || ||||||||||||||||||  |||||||||||||    
T  46903551 agagaataaaaacataatgtgagtatgagagagaaagttgtatcaaaatggttgta 46903496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 40139202 - 40139141
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| |||||||||||| |||||  || |||||||||||||||||||  ||||||||||||    
T  40139202 gaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcataaaatggttgta 40139141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 1690510 - 1690450
Alignment:
Q  25 taaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatattatt 85  Q
    |||||||||| || || ||||||||| ||||||||| ||||||||||||| | ||||||||    
T  1690510 taaaaacatattatgagtatgagagaaaaagttgtcacaaaatggttgtacaaatattatt 1690450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 43757674 - 43757614
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||| ||||||||||||||||||  || ||||| ||||||||||||  |||||||||||||    
T  43757674 aagagagagaataaaaacataatgtgagtatgaaagagaaagttgtatcaaaatggttgta 43757614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 29632521 - 29632474
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  29632521 gaagagagagaataaaaacataatatgaatgtgagagagaaaattgtc 29632474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 2827694 - 2827740
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  2827694 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 2827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 578893 - 578844
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||| ||  ||||| ||||||||||||||||||||||    
T  578893 atgaagagagagaataagaatgtaatatgaatatgagagagaaagttgtc 578844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 835957 - 835912
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||| |||||| |  ||||||||||||||||||    
T  835957 aagaaagagaataaaaaaataatatgtgtatgagagagaaagttgt 835912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 11068514 - 11068465
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||||| || |||||  ||| ||||||||||||||||||    
T  11068514 atgaagaaagagaataagaatataatgtgaacatgagagagaaagttgtc 11068465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11897260 - 11897215
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||    
T  11897260 aagagagagaataaaaacataatgtgagtatgagagagaaagttgt 11897215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 27787578 - 27787533
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagt 56  Q
    ||||||| ||||||||||||||||||  || |||||||||||||||    
T  27787578 atgaagagagagaataaaaacataatgtgagtatgagagagaaagt 27787533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 30530556 - 30530605
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| |||||||||||| |||||  || |||||||||||||||||||    
T  30530556 atgaagagagagaataaaaatataatgtgagtatgagagagaaagttgtc 30530605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 40596038 - 40596099
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| ||||| ||| || |||||  || ||||||||||||||||||| |||||||||||||    
T  40596038 gaagagagagagtaagaatataatgtgagtatgagagagaaagttgtcacaaaatggttgta 40596099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 41507194 - 41507239
Alignment:
Q  29 aacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||  || ||||||||||||||||||| |||||||||||||    
T  41507194 aacataatgtgagtatgagagagaaagttgtcacaaaatggttgta 41507239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 41558080 - 41558019
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| |||| |||||||||||||  || ||||||||||  ||||||| |||||||||||||    
T  41558080 gaagagagaggataaaaacataatgtgagtatgagagagtgagttgtcacaaaatggttgta 41558019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 45470830 - 45470871
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  45470830 agagaataaaaatataatgtgaatatgagagagaaagttgtc 45470871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 47113355 - 47113314
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  47113355 agagaataaaaacataatgtgagtatgagagagaaagttgtc 47113314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 49453567 - 49453506
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| |||||||||||  |||||  || ||||||||||||||||||| |||| ||||||||    
T  49453567 gaagagagagaataaaagtataatgtgagtatgagagagaaagttgtcacaaagtggttgta 49453506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 5477148 - 5477208
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||| |||||||||||  |||||  || ||||||||||||||||||| |||| ||||||||    
T  5477148 aagagagagaataaaagaataatgtgagtatgagagagaaagttgtcacaaagtggttgta 5477208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 44059707 - 44059755
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  44059707 atgaagaaagagaataagaacataatatgagtatgagagagaaagttgt 44059755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 6328754 - 6328708
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||    
T  6328754 gaagagagagaataaaaacataatgtgaatatgagagagaaagttgt 6328708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 24727494 - 24727441
Alignment:
Q  21 agaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||  || ||||||||||||||||||  |||||||||||||    
T  24727494 agaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatggttgta 24727441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 43650539 - 43650580
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  43650539 agagaataaaaatataatatgaatatgagagagaaagttgtc 43650580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 9834073 - 9834133
Alignment:
Q  21 agaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatat 81  Q
    ||||||||||||||||| || ||||| ||||| |||||||  |||||||||||||| ||||    
T  9834073 agaataaaaacataatatgagtatgaaagagatagttgtcataaaatggttgtataaatat 9834133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 25094433 - 25094393
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  25094433 agagaataaaaacataatgtgaatatgagagagaaagttgt 25094393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 40721860 - 40721812
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| ||||||||||||||||||  || ||||||||||||||||||    
T  40721860 atgaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 40721812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 1095830 - 1095881
Alignment:
Q  23 aataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||| |||||||||||||||| |||||  ||||||| ||||    
T  1095830 aataaaaacataatatgaatatgagagagaaaattgtcataaaatggatgta 1095881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 43725292 - 43725245
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  43725292 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 43725245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 12962472 - 12962426
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||||    
T  12962472 aagagagagaataaaaagataatatgaatataagagagaaagttgtc 12962426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 13850172 - 13850214
Alignment:
Q  17 aaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||||  || ||||||||||||||||||    
T  13850172 aaagagaataaaaacataatgtgagtatgagagagaaagttgt 13850214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 37085205 - 37085251
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| |||||||||||| |||||| |||||||| ||||||||||||    
T  37085205 gaagacagagaataaaaatataatatgaatatgaaagagaaagttgt 37085251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 285459 - 285508
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatg 68  Q
    ||||||||||||||||||| || |||| |||||||||||||  |||||||    
T  285459 agagaataaaaacataatatgagtatgcgagagaaagttgttccaaaatg 285508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 20247852 - 20247897
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||    
T  20247852 aagagagagaataaaaacataatgtgagtatgagagagaaagttgt 20247897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 29507819 - 29507770
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| |||||||||||| |||||  |||||||||||||||| |||||    
T  29507819 atgaagagagagaataaaaatataatgtgaatatgagagagaaaattgtc 29507770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 45202116 - 45202177
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| ||||||||| || |||||  |||||||||||||||||||||   ||||||||||||    
T  45202116 gaagagagagaataagaagataatgtgaatatgagagagaaagttgtaaaaaaatggttgta 45202177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18737858 - 18737910
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaa 66  Q
    |||||||| | |||||| |||||  |||||||||||||||||||||| |||||    
T  18737858 aagaaagaaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaa 18737910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 34373086 - 34373046
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  34373086 agagaataaaaacataatgtgagtatgagagagaaagttgt 34373046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 40210052 - 40210104
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaa 66  Q
    ||||||||||||||||  |||||  || ||||||||||||||||||| |||||    
T  40210052 aagaaagagaataaaagtataatgtgagtatgagagagaaagttgtcacaaaa 40210104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 42251904 - 42251948
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagtt 57  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||    
T  42251904 gaagagagagaataaaaatataatgtgaatatgagagagaaagtt 42251948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 35212945 - 35212985
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  35212945 agagaataaaaacataatgtgaatatgagagagaaagttgt 35212985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 155965 - 156012
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  155965 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 156012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 25887670 - 25887609
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||| |||||||||||||||| |  || ||||||||||||||||||| |||| ||| ||||    
T  25887670 gaagagagagaataaaaacatattgtgagtatgagagagaaagttgtcacaaagtggatgta 25887609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 41815226 - 41815185
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||| |||||| || |||||||||||||||||||    
T  41815226 agagaataaaaatataatatgagtatgagagagaaagttgtc 41815185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28548211 - 28548251
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  28548211 agagaataaaaacataatgtgagtatgagagagaaagttgt 28548251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 37970012 - 37969972
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  37970012 agagaataaaaacataatgtgagtatgagagagaaagttgt 37969972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 39533367 - 39533415
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| |||||||||||| || ||| |||||||||||||||| ||||    
T  39533367 atgaagagagagaataaaaatatgatatgaatatgagagagaaaattgt 39533415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 41458890 - 41458930
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  41458890 agagaataaaaacataatgtgagtatgagagagaaagttgt 41458930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 42552981 - 42552941
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  42552981 agagagtaaaaacataatatgaatatgagagggaaagttgt 42552941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 27384262 - 27384202
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||| ||||||||| || |||||| |||||||||||||||||||||   ||||||||||||    
T  27384262 aagagagagaataagaatataatatgaatatgagagagaaagttgtaataaaatggttgta 27384202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 41609661 - 41609709
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||||||||||||||||||||||  || ||||||||| ||||||||    
T  41609661 atgaagaaagagaataaaaacataatgtgagtatgagagataaagttgt 41609709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 45761234 - 45761282
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtcgcaaaat 67  Q
    ||||| |||||| |||||| |||||||||||||||||||||| ||||||    
T  45761234 agagagtaaaaatataatatgaatatgagagagaaagttgtcacaaaat 45761282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 32365677 - 32365712
Alignment:
Q  39 gaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    |||||||||||||||||||||| |||||||||||||    
T  32365677 gaatatgagagagaaagttgtcacaaaatggttgta 32365712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 37731996 - 37731941
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||||  || ||||||||||||||||||  ||||||| |||||    
T  37731996 agagaataaaaacataatgtgagtatgagagagaaagttgtaccaaaatgattgta 37731941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 40590677 - 40590634
Alignment:
Q  24 ataaaaacataataggaatatgagagagaaagttgtcgcaaaat 67  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||    
T  40590677 ataaaaacataatatgaatatgagacagaaagttgtcacaaaat 40590634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 1031841 - 1031795
Alignment:
Q  14 aagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||    
T  1031841 aagagagagaataaaaacataatgtgagtatgagagagaaagttgtc 1031795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 34538017 - 34537971
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||    
T  34538017 gaagagagagaataaaaacataatgtgagtatgagagagaaagttgt 34537971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 149277 - 149318
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    |||||||||||| |||||| || |||||||||||||||||||    
T  149277 agagaataaaaatataatatgagtatgagagagaaagttgtc 149318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 5466489 - 5466526
Alignment:
Q  23 aataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  5466489 aataaaaacataatgtgaatatgagagagaaagttgtc 5466526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 12241139 - 12241098
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  12241139 agagaataaaaacataatgtgagtatgagagagaaagttgtc 12241098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33820326 - 33820367
Alignment:
Q  19 agagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||||||||||||||  || |||||||||||||||||||    
T  33820326 agagaataaaaacataatgtgagtatgagagagaaagttgtc 33820367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 46686312 - 46686260
Alignment:
Q  21 agaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgta 74  Q
    ||||||||||||||||  || ||||||||||||||||||  |||||||||||||    
T  46686312 agaataaaaacataatgtgagtatgagagagaaagttgt-acaaaatggttgta 46686260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 48722158 - 48722109
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||||||||||||  || ||||||||||||| |||||    
T  48722158 atgaagagagagaataaaaacataatgtgagtatgagagagaaaattgtc 48722109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 53763793 - 53763842
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgtc 60  Q
    ||||||| ||||||||| || ||||| ||| |||||||||||||||||||    
T  53763793 atgaagagagagaataagaatataatgggagtatgagagagaaagttgtc 53763842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 35037696 - 35037656
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaa 53  Q
    ||||| ||||||||||||||||||  |||||||||||||||    
T  35037696 gaagagagagaataaaaacataatgtgaatatgagagagaa 35037656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 53662410 - 53662458
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| ||||||||| ||||| ||  |||||||||||||||||||||    
T  53662410 atgaagagagagaataagaacatcatgtgaatatgagagagaaagttgt 53662458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 3049514 - 3049560
Alignment:
Q  13 gaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  3049514 gaagagagagaataaaaacataatctgaatgtgagagagaaagttgt 3049560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 27176046 - 27175998
Alignment:
Q  11 atgaagaaagagaataaaaacataataggaatatgagagagaaagttgt 59  Q
    ||||||| |||||||||||| |||||| || ||||||||||||| ||||    
T  27176046 atgaagagagagaataaaaatataatatgagtatgagagagaaaattgt 27175998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 32149568 - 32149504
Alignment:
Q  21 agaataaaaacataataggaatatgagagagaaagttgtcgcaaaatggttgtatagatattatt 85  Q
    |||||||||  ||||| | | ||||||||||||||||||| |||| |||||||| | ||||||||    
T  32149568 agaataaaatgataatggaagtatgagagagaaagttgtcacaaagtggttgtacaaatattatt 32149504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 366368 - 366328
Alignment:
Q  26 aaaaacataataggaatatgagagagaaagttgtcgcaaaa 66  Q
    |||||||||||  |||||||||||||||||||||| |||||    
T  366368 aaaaacataatgtgaatatgagagagaaagttgtcacaaaa 366328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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