View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_high_24 (Length: 287)
Name: NF18527_high_24
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 8403707 - 8403440
Alignment:
| Q |
5 |
tgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8403707 |
tgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgt |
8403608 |
T |
|
| Q |
105 |
gagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattatttt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8403607 |
gagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttgatttcttgtttgattcattctttacatatagattctttcgattatttt |
8403508 |
T |
|
| Q |
205 |
gaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagagaattgtata |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8403507 |
gaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagagaattgtata |
8403440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 8429558 - 8429362
Alignment:
| Q |
9 |
gtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgaga |
108 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
8429558 |
gtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctgctctctatcggatggaaggacgtgaga |
8429459 |
T |
|
| Q |
109 |
tcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaa |
208 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
8429458 |
tagatgaattcgccaacaaactcttctgaaaacaacatttt--------ttttttgtttgattcattcttttcatacgaattctttcaattattttgaaa |
8429367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University