View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18527_high_3 (Length: 535)

Name: NF18527_high_3
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18527_high_3
NF18527_high_3
[»] chr3 (23 HSPs)
chr3 (1-292)||(50515858-50516150)
chr3 (307-501)||(12149228-12149438)
chr3 (367-495)||(27926316-27926444)
chr3 (367-495)||(25874384-25874514)
chr3 (367-493)||(3778662-3778788)
chr3 (367-504)||(21288410-21288548)
chr3 (367-501)||(48251164-48251298)
chr3 (368-484)||(5295534-5295650)
chr3 (367-482)||(13826371-13826486)
chr3 (209-290)||(10179330-10179411)
chr3 (209-290)||(26297629-26297710)
chr3 (214-290)||(3744423-3744499)
chr3 (391-484)||(26749152-26749245)
chr3 (359-427)||(36585036-36585104)
chr3 (214-272)||(43267884-43267942)
chr3 (205-290)||(34209892-34209979)
chr3 (209-290)||(54949173-54949256)
chr3 (391-490)||(53208805-53208903)
chr3 (391-455)||(25022411-25022475)
chr3 (359-454)||(27519860-27519955)
chr3 (192-290)||(39822043-39822142)
chr3 (408-495)||(32536653-32536740)
chr3 (440-483)||(36585102-36585145)
[»] chr4 (23 HSPs)
chr4 (304-501)||(40568613-40568810)
chr4 (127-287)||(26576948-26577106)
chr4 (359-487)||(36464491-36464619)
chr4 (359-495)||(8818973-8819109)
chr4 (369-495)||(38951944-38952070)
chr4 (371-494)||(19842054-19842177)
chr4 (367-494)||(41041758-41041885)
chr4 (367-495)||(22279323-22279450)
chr4 (359-434)||(29117318-29117393)
chr4 (369-500)||(33340921-33341052)
chr4 (359-496)||(40714503-40714639)
chr4 (379-495)||(43624675-43624781)
chr4 (364-496)||(17119964-17120096)
chr4 (385-483)||(51357530-51357628)
chr4 (361-465)||(23627178-23627282)
chr4 (214-290)||(34738942-34739018)
chr4 (364-472)||(42555654-42555762)
chr4 (369-480)||(47224121-47224232)
chr4 (308-361)||(42555582-42555635)
chr4 (414-459)||(48747921-48747966)
chr4 (205-237)||(31555472-31555504)
chr4 (377-432)||(47304077-47304132)
chr4 (392-433)||(50667871-50667912)
[»] chr2 (18 HSPs)
chr2 (304-501)||(42622345-42622542)
chr2 (86-290)||(37777755-37777959)
chr2 (86-290)||(22988996-22989200)
chr2 (367-491)||(5110528-5110652)
chr2 (367-501)||(5704917-5705051)
chr2 (368-504)||(5938998-5939134)
chr2 (368-491)||(13625999-13626122)
chr2 (367-481)||(31575637-31575751)
chr2 (367-476)||(45150940-45151049)
chr2 (166-290)||(3245058-3245181)
chr2 (214-290)||(40653628-40653704)
chr2 (203-290)||(29458516-29458604)
chr2 (218-272)||(37904051-37904105)
chr2 (218-290)||(22989985-22990057)
chr2 (207-254)||(6414297-6414344)
chr2 (367-422)||(13807865-13807920)
chr2 (367-455)||(14701489-14701577)
chr2 (244-290)||(31618560-31618606)
[»] chr7 (18 HSPs)
chr7 (304-476)||(27337254-27337426)
chr7 (364-497)||(1052740-1052873)
chr7 (367-500)||(33189638-33189771)
chr7 (364-504)||(36299119-36299259)
chr7 (364-504)||(47925151-47925291)
chr7 (367-501)||(11038862-11038996)
chr7 (369-500)||(30541170-30541295)
chr7 (367-482)||(7767314-7767429)
chr7 (367-495)||(38440094-38440221)
chr7 (359-484)||(2943745-2943869)
chr7 (369-476)||(5973310-5973417)
chr7 (214-290)||(17026591-17026667)
chr7 (367-447)||(23809405-23809485)
chr7 (218-290)||(39073276-39073348)
chr7 (362-463)||(22518891-22518991)
chr7 (411-479)||(43427061-43427129)
chr7 (209-290)||(47936372-47936455)
chr7 (308-364)||(2943880-2943936)
[»] chr5 (12 HSPs)
chr5 (326-501)||(40057130-40057305)
chr5 (304-501)||(39800121-39800334)
chr5 (332-492)||(35188309-35188469)
chr5 (332-495)||(39206815-39206978)
chr5 (308-492)||(33742401-33742584)
chr5 (367-495)||(3926514-3926642)
chr5 (369-494)||(23429557-23429682)
chr5 (392-492)||(42837853-42837953)
chr5 (368-483)||(39886987-39887102)
chr5 (367-482)||(42878646-42878761)
chr5 (359-483)||(26621676-26621800)
chr5 (360-412)||(2209865-2209917)
[»] scaffold0115 (1 HSPs)
scaffold0115 (304-501)||(22215-22428)
[»] chr1 (18 HSPs)
chr1 (304-501)||(25293726-25293939)
chr1 (367-494)||(29677293-29677420)
chr1 (367-495)||(31584920-31585048)
chr1 (86-290)||(42332515-42332719)
chr1 (328-504)||(25987628-25987804)
chr1 (367-491)||(11894579-11894703)
chr1 (373-495)||(48378766-48378888)
chr1 (391-489)||(47141130-47141228)
chr1 (359-476)||(2191491-2191608)
chr1 (406-495)||(17562514-17562603)
chr1 (379-487)||(15379073-15379181)
chr1 (423-495)||(42507300-42507372)
chr1 (423-501)||(36728540-36728618)
chr1 (359-429)||(38264075-38264145)
chr1 (214-290)||(39621667-39621743)
chr1 (339-504)||(52252863-52253028)
chr1 (183-253)||(22909414-22909486)
chr1 (308-362)||(15378980-15379034)
[»] scaffold0634 (1 HSPs)
scaffold0634 (307-501)||(8947-9157)
[»] chr8 (15 HSPs)
chr8 (86-290)||(32207865-32208069)
chr8 (367-504)||(8226914-8227051)
chr8 (361-495)||(9762609-9762743)
chr8 (369-495)||(36582614-36582740)
chr8 (367-487)||(28211605-28211725)
chr8 (369-484)||(7986896-7987011)
chr8 (392-494)||(31006377-31006479)
chr8 (369-476)||(7968163-7968270)
chr8 (168-272)||(44212210-44212315)
chr8 (208-290)||(32664000-32664082)
chr8 (359-491)||(11481729-11481862)
chr8 (214-287)||(28841626-28841699)
chr8 (364-483)||(6870295-6870414)
chr8 (207-254)||(9083093-9083140)
chr8 (308-361)||(28211747-28211800)
[»] chr6 (12 HSPs)
chr6 (367-495)||(7622622-7622750)
chr6 (359-494)||(641713-641848)
chr6 (368-501)||(35166963-35167096)
chr6 (359-495)||(10408624-10408760)
chr6 (367-504)||(10788796-10788932)
chr6 (367-470)||(28582484-28582587)
chr6 (214-290)||(18880859-18880935)
chr6 (166-290)||(8643487-8643610)
chr6 (209-290)||(16853445-16853526)
chr6 (205-237)||(32545668-32545700)
chr6 (367-434)||(8577058-8577125)
chr6 (308-364)||(641859-641914)
[»] scaffold0155 (1 HSPs)
scaffold0155 (367-504)||(6619-6756)
[»] scaffold0057 (1 HSPs)
scaffold0057 (367-492)||(66858-66983)
[»] scaffold0061 (1 HSPs)
scaffold0061 (214-290)||(46338-46413)
[»] scaffold0017 (1 HSPs)
scaffold0017 (214-290)||(152374-152449)
[»] scaffold0564 (1 HSPs)
scaffold0564 (205-290)||(1873-1960)
[»] scaffold0316 (1 HSPs)
scaffold0316 (205-290)||(5346-5432)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 50515858 - 50516150
Alignment:
Q  1 ataaatgtgtagtaaatagataaatgatgattttccctttgtaaacnnnnnnnnnn-gatagataaatgattctaccaaaaaataataatggatagtgga 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||           ||||||||||||||||||||||||||||||||| |||||||||    
T  50515858 ataaatgtgtagtaaatagataaatgatgattttccccttgtaaacaaaaaaaaaaagatagataaatgattctaccaaaaaataataatagatagtgga 50515957  T
Q  100 aggagttacaaagcttagtcaatcatcagttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataaatagatggaaaata 199  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50515958 aggagatacaaagcttagtcaatcatcaattacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataaatagatggaaaata 50516057  T
Q  200 gagaaaaagaaaagagagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgtatc 292  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| || ||| ||| |||||||||||    
T  50516058 gagaaaaagaaaagagagagccacatggtgaaagtttagaaaattagttagaaagcggggcattggtgagatgccatgtaagcaaagtgtatc 50516150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 307 - 501
Target Start/End: Original strand, 12149228 - 12149438
Alignment:
Q  307 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaata----------------gcggatgcggataccattaaatccgcatccgc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| |||||||||||||||||| |||||||     
T  12149228 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt 12149327  T
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggata 490  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12149328 atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggata 12149427  T
Q  491 tccacagatgc 501  Q
    ||||| |||||    
T  12149428 tccacggatgc 12149438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 27926444 - 27926316
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  27926444 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctatttattttatccatggatatccattaaggtatccgctccgtgtc 27926345  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
    |||||||||||||||||||||||||||||    
T  27926344 cgtggcggattttatccgcggatatccac 27926316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 25874514 - 25874384
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattt--tatccgtggatatccattaaggtatccgctccgtg 464  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||  ||||| |||||||||||||||||||||||||||||    
T  25874514 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatatccatggatatccattaaggtatccgctccgtg 25874415  T
Q  465 tccgtggcggattttatccgcggatatccac 495  Q
      |||| ||||||||||||||||||||||||    
T  25874414 ctcgtgacggattttatccgcggatatccac 25874384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 367 - 493
Target Start/End: Complemental strand, 3778788 - 3778662
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||| ||||||||||||| | |||||||||||||||| ||||||||| |||  |||||||||| | ||||||||||||||||||||||||||||| |    
T  3778788 ggataccgttaaatccgcatctgtatccattaattagcggatagttaaaaaatctgtttattttattcatggatatccattaaggtatccgctccgtgcc 3778689  T
Q  467 cgtggcggattttatccgcggatatcc 493  Q
    |||||||||||||||||||||||||||    
T  3778688 cgtggcggattttatccgcggatatcc 3778662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 504
Target Start/End: Original strand, 21288410 - 21288548
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaata-tccatttattttatccgtggatatccattaaggtatccgctccgtgt 465  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||| | ||| |||||||||||| | ||||||||||||| |||||||||||||     
T  21288410 ggataccattaaatccgcatccctatccattaattagcgggtagttaaaaaaatccgtttattttatccatagatatccattaagatatccgctccgtgc 21288509  T
Q  466 ccgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||| || |||||||||||| |||||||  ||||||||    
T  21288510 ccgtgacgtattttatccgcgaatatccatggatgcaga 21288548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 501
Target Start/End: Complemental strand, 48251298 - 48251164
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||| ||| |||||||||||||||| | || |||||||||||||||||||||||| | |||||||||||| ||||| ||||||| ||    
T  48251298 ggataccattaaatccgtatctgcatccattaattagcagttaattaaaatatccatttattttatccatagatatccattaaagtatctgctccgtatc 48251199  T
Q  467 cgtggcggattttatccgcggatatccacagatgc 501  Q
    |||| | |||||||||||||||||| |||| ||||    
T  48251198 cgtgacagattttatccgcggatatgcacatatgc 48251164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 368 - 484
Target Start/End: Original strand, 5295534 - 5295650
Alignment:
Q  368 gataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 467  Q
    |||||||||||||| ||||| | ||||||||||||| |||||||||||| || | |||||||||| | ||||||||||||||||||||||||||||| ||    
T  5295534 gataccattaaatctgcatctgtatccattaattagtgggtagttaaaaaatacgtttattttattcatggatatccattaaggtatccgctccgtgccc 5295633  T
Q  468 gtggcggattttatccg 484  Q
    ||||  |||||||||||    
T  5295634 gtggtagattttatccg 5295650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 367 - 482
Target Start/End: Original strand, 13826371 - 13826486
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||| | ||||  ||||||||||||||| |||||||||| |||| |||||||||||| |||||||| ||||| ||||| |||||||| |    
T  13826371 ggataccattaaatctgtatccatatccattaattagcgagtagttaaaaaatccgtttattttatccatggatatctattaatgtatctgctccgtgcc 13826470  T
Q  467 cgtggcggattttatc 482  Q
    ||||||||||||||||    
T  13826471 cgtggcggattttatc 13826486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 10179330 - 10179411
Alignment:
Q  209 aaaagagagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||| |||| ||| ||| |||||||||    
T  10179330 aaaagagaaagccacttggtgaatgcttagaaaattagttagaaaagggggcattggtgtggtgacatgtaagcaaagtgta 10179411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 26297629 - 26297710
Alignment:
Q  209 aaaagagagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||  || |||| |||||||||    
T  26297629 aaaagacagcgccacatggtgaatgcttagaaaattagttagaaaggggaaaattggtgaggtaacacataagcaaagtgta 26297710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 3744423 - 3744499
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||||||| |||||   |||||||||||| || |||| |||||||||    
T  3744423 agagagccacatggtgaatgcttagaaaattagttagagaggggagaattggtgaggtgacacataagcaaagtgta 3744499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 26749152 - 26749245
Alignment:
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccg 484  Q
    ||||||||| ||||  |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||  | ||||||| | |||||||||||    
T  26749152 atccattaaatagcaagtagttgaaatatccatttattttatccattgatatccattaaggtatccactttgagtccgtgacagattttatccg 26749245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 36585036 - 36585104
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttat 427  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||| ||||||    
T  36585036 gcgggtgcggataccatttaatctgcatccgtatccattaattagcgggtagataaaatatctatttat 36585104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 43267884 - 43267942
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtg 272  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||    
T  43267884 agagaaccacatgatgaatgcttagaaaattagttagagaggggggcattggtgaggtg 43267942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 34209979 - 34209892
Alignment:
Q  205 aaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||  ||||| || ||||||||| |||| |||| ||||| || ||| ||| |||||||||    
T  34209979 aaagaaaagagagagccacatggtgaatgcttatagaatataagttagaaaagggggcatttgtgagatgacatgtaagcaaagtgta 34209892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 54949173 - 54949256
Alignment:
Q  209 aaaagagagagccacatggtgaa--tgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||||||| |||||||| |||| ||| |||  ||||||||    
T  54949173 aaaagagaaagccacttggtgaaaatgcttagaaaattagttagaaaggggggcattggtgtggtgacatgtaagtaaagtgta 54949256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 490
Target Start/End: Original strand, 53208805 - 53208903
Alignment:
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggata 490  Q
    ||||||||| ||  ||||||||  ||||||||||||||||| || ||||||||||||||||||| |||  ||||| |||  |||||||||||| ||||||    
T  53208805 atccattaagtaatgggtagttgtaatatccatttattttacccatggatatccattaaggtat-cgcctcgtgttcgtaccggattttatccacggata 53208903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 25022475 - 25022411
Alignment:
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc 455  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| || ||||| |||||||||||    
T  25022475 atccattaaataacgggtagttaaaatatctatttatattatccatgaatatcaattaaggtatc 25022411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 27519955 - 27519860
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 454  Q
    |||||||||||| |||| |||||| |||||  |||||| || || | | |||||||||||| | |||||||||||| ||||| |||||||| ||||    
T  27519955 gcggatgcggatcccatgaaatccacatccatatccataaaataacagctagttaaaatattcgtttattttatccatggatgtccattaaagtat 27519860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 39822043 - 39822142
Alignment:
Q  192 ggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgt 289  Q
    |||||| ||| | |||||||||||||||||||||| ||||||||  ||||| || ||||||||| |||| |||| ||||| || ||| ||| ||||||||    
T  39822043 ggaaaaaagaaagaaagaaaagagagagccacatgatgaatgcttatagaatataagttagaaaagggg-catttgtgagatgacatgtaagcaaagtgt 39822141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 495
Target Start/End: Complemental strand, 32536740 - 32536653
Alignment:
Q  408 tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccac 495  Q
    ||||| |||||||| ||||||| |||| || ||| | |||||| ||||| |  |||| |||| ||||| |||||||||||||||||||    
T  32536740 tagttgaaatatccgtttatttgatccatgaataacaattaagatatccacctcgtgcccgttgcggactttatccgcggatatccac 32536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Original strand, 36585102 - 36585145
Alignment:
Q  440 tatccattaaggtatccgctccgtgtccgtggcggattttatcc 483  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||    
T  36585102 tatccattaaagtatccgctccatgtccgtggcagattttatcc 36585145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 9e-96; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 304 - 501
Target Start/End: Complemental strand, 40568810 - 40568613
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  40568810 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcgaataccattaaatccgcatccgtatccattaattag 40568711  T
Q  404 cgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  40568710 cgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcgaattttatccgcggatatccacggatgc 40568613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 26576948 - 26577106
Alignment:
Q  127 agttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataaatagatggaaaatagagaaaaagaaaagagagagccacatg 226  Q
    |||| ||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  26576948 agttgcatatttaagaattatatgaatgagcatatgtaaatgtaaatatttagtaataaatagatggaaaatagagaaaaagaaa--agagagccacatg 26577045  T
Q  227 gtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagt 287  Q
    ||||| | ||||||||||||||||||||| || |||||||||| || ||| ||| ||||||    
T  26577046 gtgaacgattagaaaattagttagaaaggagggcattggtgagttgacatgtaagcaaagt 26577106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 359 - 487
Target Start/End: Complemental strand, 36464619 - 36464491
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  36464619 gcgggtgcggatatcattaaatccgcatccgtatctattaattagcggatagttaaaatatccgtttattttatccatggatatccgttaaggtatccgc 36464520  T
Q  459 tccgtgtccgtggcggattttatccgcgg 487  Q
    |||||||||||||||||||||||||||||    
T  36464519 tccgtgtccgtggcggattttatccgcgg 36464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 359 - 495
Target Start/End: Complemental strand, 8819109 - 8818973
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||| |||||||||||||||||||||||||  |||||||||||| | | |||||||||||||| |||||||||||| || |||||| |||||||||||||    
T  8819109 gcgggtgcggataccattaaatccgcatccatatccattaattaacagatagttaaaatatccgtttattttatccatgaatatccgttaaggtatccgc 8819010  T
Q  459 tccgtgtccgtggcggattttatccgcggatatccac 495  Q
    | |||||||||| ||||||||||||||||||||||||    
T  8819009 ttcgtgtccgtgacggattttatccgcggatatccac 8818973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 495
Target Start/End: Original strand, 38951944 - 38952070
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||| |||||||||||||  | |    
T  38951944 ataccattaaatccgcatctgtatccattaattagcgggtagttaaaaaatctgtttattttatccgtgaatatccattaatgtatccgctccgtacctg 38952043  T
Q  469 tggcggattttatccgcggatatccac 495  Q
    |||||||||||||||||||||||||||    
T  38952044 tggcggattttatccgcggatatccac 38952070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 371 - 494
Target Start/End: Original strand, 19842054 - 19842177
Alignment:
Q  371 accattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtg 470  Q
    |||||||||||||||||   |||||||||||||||  ||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  19842054 accattaaatccgcatctttatccattaattagcgattagttaaaaaatccgtttattttatccatggatatccattaaggtatccactccgtgtccgtg 19842153  T
Q  471 gcggattttatccgcggatatcca 494  Q
    |||||||||||||| |||||||||    
T  19842154 gcggattttatccgtggatatcca 19842177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 367 - 494
Target Start/End: Original strand, 41041758 - 41041885
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||| |||||||| |||||| | ||| |||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||| |    
T  41041758 ggatatcattaaattcgcatctgtatctattaattagcgggtagttaaaaaatccatttattttatccataaatatccattaaggtatccgctccgtgcc 41041857  T
Q  467 cgtggcggattttatccgcggatatcca 494  Q
    |||   ||||||||||||||||||||||    
T  41041858 cgtaatggattttatccgcggatatcca 41041885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 367 - 495
Target Start/End: Original strand, 22279323 - 22279450
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||| |||||||| ||||| | |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| | ||||||    
T  22279323 ggatactattaaatctgcatctgtatccattaattaacgggtagttaaaa-atccatttattttatccatggatatcctttaagggatccgtttcgtgtc 22279421  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
    | |||||||||||||||||||| ||||||    
T  22279422 catggcggattttatccgcggaaatccac 22279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 29117318 - 29117393
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatcc 434  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  29117318 gcggatgcggataccgttaaatccgcatccgtatccattaattagcgggtagttaaaatatccgtttattttatcc 29117393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 369 - 500
Target Start/End: Original strand, 33340921 - 33341052
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||| ||||||| |||||||||||||  |||||||||||||||| |||||||||||| | ||| || |||||||||||   | |||||||     
T  33340921 ataccattaaatctgcatccgtatccattaattagtaggtagttaaaatatccgtttattttatccatagatgtctattaaggtatctatttcgtgtcca 33341020  T
Q  469 tggcggattttatccgcggatatccacagatg 500  Q
    |  |||||||||||||||||||||||| ||||    
T  33341021 taacggattttatccgcggatatccacggatg 33341052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 359 - 496
Target Start/End: Complemental strand, 40714639 - 40714503
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||| ||||||| |||||||||| ||||| | ||||| ||||||| || ||||||||||||||||||||||||||  |  ||||||||||| ||||||||    
T  40714639 gcgggtgcggatgccattaaatctgcatctgtatccactaattagtgg-tagttaaaatatccatttattttatcgataaatatccattaatgtatccgc 40714541  T
Q  459 tccgtgtccgtggcggattttatccgcggatatccaca 496  Q
    | |||| | ||| |||||||||| ||||||||||||||    
T  40714540 ttcgtgcctgtgacggattttattcgcggatatccaca 40714503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 43624675 - 43624781
Alignment:
Q  379 atccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattt 478  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||          |||||||||| ||||||||||||||||||||||||    
T  43624675 atccgcatccgtatccattaattagcgggtagttaaaaaatccgtttgttttatc----------cattaaggtacccgctccgtgtccgtggcggattt 43624764  T
Q  479 tatccgcggatatccac 495  Q
    |||| ||||||||||||    
T  43624765 tatctgcggatatccac 43624781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 496
Target Start/End: Complemental strand, 17120096 - 17119964
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    ||||||| ||||||| ||||||| || |||||||||||||||| |||||||||||| | ||||||| ||||  | ||||| ||||||| |||||||| ||    
T  17120096 tgcggatgccattaagtccgcattcgtatccattaattagcggatagttaaaatattcgtttatttcatccacgaatatctattaaggcatccgctctgt 17119997  T
Q  464 gtccgtggcggattttatccgcggatatccaca 496  Q
    | |||||| |||||||||  || ||||||||||    
T  17119996 gcccgtggtggattttattagcagatatccaca 17119964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 385 - 483
Target Start/End: Original strand, 51357530 - 51357628
Alignment:
Q  385 atccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc 483  Q
    ||||||||| |||||||||| | || ||||||||||| |||||||||||| |  ||||||||||||||||| ||| | |||| ||||||||||||||||    
T  51357530 atccgcatcaattaattagcagataattaaaatatccgtttattttatccataaatatccattaaggtatctgcttcatgtcagtggcggattttatcc 51357628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 361 - 465
Target Start/End: Original strand, 23627178 - 23627282
Alignment:
Q  361 ggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc 460  Q
    |||||| |||||||||| ||  ||||  | |||||||||||||| |||||||||||||| | |||||||||||| || || ||||||||||||||| |||    
T  23627178 ggatgcagataccattatatatgcatatgtatccattaattagcaggtagttaaaatattcgtttattttatccatgtatttccattaaggtatccactc 23627277  T
Q  461 cgtgt 465  Q
    |||||    
T  23627278 cgtgt 23627282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 34738942 - 34739018
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||| ||||||||||||||||||||||||||||||| | | |||||||||||| || |||| |||||||||    
T  34738942 agagagccacgtggtgaatgcttagaaaattagttagaaaggagaaaattggtgaggtgacacataaacaaagtgta 34739018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 42555654 - 42555762
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    |||||||| |||||||||| ||| |  || ||||||||||  |||||||||||||||  |||||||||| | | ||||||||||||||||||||||| ||    
T  42555654 tgcggatatcattaaatccacattcatattcattaattagttggtagttaaaatatctgtttattttattcattgatatccattaaggtatccgctctgt 42555753  T
Q  464 gtccgtggc 472  Q
    ||| |||||    
T  42555754 gtctgtggc 42555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 480
Target Start/End: Original strand, 47224121 - 47224232
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||| ||||| ||||| ||||||||||| ||| || || || ||||||||| ||||||||||  ||||||| |||||||||||  ||| |||||  |    
T  47224121 ataccatcaaatctgcatctgcatccattaaatagtggataattgaaatatccacttattttatctttggatattcattaaggtatttgcttcgtgtttg 47224220  T
Q  469 tggcggatttta 480  Q
    | ||||||||||    
T  47224221 ttgcggatttta 47224232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 42555582 - 42555635
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcg 361  Q
    ||||||||||||||| |||||||||||||| |||||| |||  |||||||||||    
T  42555582 taggaagttgaaaggtattaaggatatttatgtaatttacttggtttaatagcg 42555635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 48747921 - 48747966
Alignment:
Q  414 aaatatccatttattttatccgtggatatccattaaggtatccgct 459  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  48747921 aaatatccgtttattttatccttggatatccattaaggtattcgct 48747966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 31555504 - 31555472
Alignment:
Q  205 aaagaaaagagagagccacatggtgaatgctta 237  Q
    |||||||||||||||||||||||||||||||||    
T  31555504 aaagaaaagagagagccacatggtgaatgctta 31555472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 47304077 - 47304132
Alignment:
Q  377 aaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttat 432  Q
    ||||| ||||| ||||||||||| || ||| |||| ||||||||||||||||||||    
T  47304077 aaatctgcatctgcatccattaaataacggatagtaaaaatatccatttattttat 47304132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 50667912 - 50667871
Alignment:
Q  392 tccattaattagcgggtagttaaaatatccatttattttatc 433  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  50667912 tccattaactagcaagtagttaaaatatccatttattttatc 50667871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 304 - 501
Target Start/End: Complemental strand, 42622542 - 42622345
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattag 403  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||     
T  42622542 tttataggaagttaaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtattcattaattaa 42622443  T
Q  404 cgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgc 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  42622442 cgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgttccgtgtccgtgacggattttatccgcggatatccacggatgc 42622345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 37777959 - 37777755
Alignment:
Q  86 taatggatagtggaaggagttacaaagcttagtcaatcatcagttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataa 185  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||| |||| | ||||    ||||||||||||||    
T  37777959 taatggatagtggaaggagttacaaagctcactcaattatcagttacatatttaagaattataagaatgaacatatgtaaat----atatttagtaataa 37777864  T
Q  186 ----atagatggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatata 279  Q
        ||||||||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||| ||    
T  37777863 atagatagatggaaagtag-gaaaaagaaaagagagagccacatggtgaatgcttatagaaaattagttagaaaggggga-attggtgaggtgacatgta 37777766  T
Q  280 atcaaagtgta 290  Q
    | |||||||||    
T  37777765 agcaaagtgta 37777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 22988996 - 22989200
Alignment:
Q  86 taatggatagtggaaggagttacaaagcttagtcaatcatcagttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataa 185  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||| | ||||    ||||||||||||||    
T  22988996 taatggatagtggaaggagttacaaagctcagtcaattatcagttacatatttaagaattataagaatgaacatatgtaaat----atatttagtaataa 22989091  T
Q  186 ----atagatggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatata 279  Q
        ||||||||||| ||| |||||||||||||||||| |||||| ||||||||  |||||||||||||||||||||||| |||||||||||| ||| ||    
T  22989092 atagatagatggaaagtag-gaaaaagaaaagagagagtcacatgctgaatgcttatagaaaattagttagaaaggggga-attggtgaggtgacatgta 22989189  T
Q  280 atcaaagtgta 290  Q
    | |||||||||    
T  22989190 agcaaagtgta 22989200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 5110528 - 5110652
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||||    
T  5110528 ggataccattaaatccgcattcgtatccattaattagcgggtagttaaaaaattcatttattttatccatggatatccattaaggtatccgctctgtgtc 5110627  T
Q  467 cgtggcggattttatccgcggatat 491  Q
    |||||| ||||||||||||||||||    
T  5110628 cgtggcagattttatccgcggatat 5110652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 367 - 501
Target Start/End: Original strand, 5704917 - 5705051
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||  |||||| |||||||||||||| |||||| |    
T  5704917 ggataccattaaatccacatccgtatccattaattagcggatagttaaaaaatccatttattttatccacggatatacattaaggtatccgttccgtgcc 5705016  T
Q  467 cgtggcggattttatccgcggatatccacagatgc 501  Q
    ||||||||||||||||||||||||||||| |||||    
T  5705017 cgtggcggattttatccgcggatatccacggatgc 5705051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 368 - 504
Target Start/End: Original strand, 5938998 - 5939134
Alignment:
Q  368 gataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 467  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||| |||||| |||||    
T  5938998 gataccattaaatccgcatttgtatccattaattagcgggtagttaaaaaatccatttattatatccatgaatatccattaaggtattcgctccatgtcc 5939097  T
Q  468 gtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||| |||||||||||  ||||||||||||||||||||    
T  5939098 gtgacggattttatctacggatatccacagatgcaga 5939134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 368 - 491
Target Start/End: Complemental strand, 13626122 - 13625999
Alignment:
Q  368 gataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 467  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||||| | |||||||||||||||||||||| || | ||    
T  13626122 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctgtttattttatccatagatatccattaaggtatccgcttcgcgccc 13626023  T
Q  468 gtggcggattttatccgcggatat 491  Q
    |||| | |||||||||| ||||||    
T  13626022 gtggtgaattttatccgtggatat 13625999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 367 - 481
Target Start/End: Complemental strand, 31575751 - 31575637
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||| || || | |||||||||||| || |||||||||||| ||||| ||| |||||    
T  31575751 ggatacaattaaatccgcatccgtatccattaattagcgggtagttacaaaattcgtttattttatccatgcatatccattaagatatccactctgtgtc 31575652  T
Q  467 cgtggcggattttat 481  Q
     ||||||||||||||    
T  31575651 agtggcggattttat 31575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 367 - 476
Target Start/End: Complemental strand, 45151049 - 45150940
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||  || |    
T  45151049 ggataccattaaatccgcatctgtatccattaattagcggatagttaaaaaatccgtttattttatccatggatatctattaaggtatccgttctatgcc 45150950  T
Q  467 cgtggcggat 476  Q
    ||||||||||    
T  45150949 cgtggcggat 45150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 3245181 - 3245058
Alignment:
Q  166 atgtaaatatttagtaataaatagatggaaaatag-agaaaaagaaaagagagagccacatggtgaatgctt--agaaaattagttagaaagggggacat 262  Q
    |||||||||||||||||   ||||||| |||| || ||||||||||||||||||||||||||||||||||||  ||||||| |||||||||  |||||||    
T  3245181 atgtaaatatttagtaa---atagatgaaaaaaaggagaaaaagaaaagagagagccacatggtgaatgcttaaagaaaataagttagaaa-agggacat 3245086  T
Q  263 tggtgaggtgtcatataatcaaagtgta 290  Q
    | |||||||| ||| ||| |||||||||    
T  3245085 ttgtgaggtgacatgtaagcaaagtgta 3245058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 40653628 - 40653704
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| || |||| |||||||||    
T  40653628 agagagccacatggtgaatgcttagaaaattagttagataggggaaaattggtgaggtggcacataagcaaagtgta 40653704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 29458604 - 29458516
Alignment:
Q  203 aaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||| |||| |||||||| ||| ||| |||||||||    
T  29458604 aaaaagaaaagagagagccacatggtgaatgcttatagaaaataagttagaaaagggg-catttgtgaggtgacatgtaagcaaagtgta 29458516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 37904051 - 37904105
Alignment:
Q  218 agccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtg 272  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  37904051 agccacatggtgaatgcttagaaaattagttagagaggggggcattggtgaggtg 37904105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 22989985 - 22990057
Alignment:
Q  218 agccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||| || |||| |||| ||||    
T  22989985 agccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaaatgta 22990057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 6414297 - 6414344
Alignment:
Q  207 agaaaagagagagccacatggtgaatgcttagaaaattagttagaaag 254  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6414297 agaaaagagagagccacgtggtgaatgcttagaaaattagttaaaaag 6414344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 13807865 - 13807920
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatcca 422  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||    
T  13807865 ggataccattaaatccacatccgtatccattaataagcgggtagttaaaaaatcca 13807920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 14701489 - 14701577
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc 455  Q
    ||||||||| ||||||||||||| |||||| || |  ||| ||||| |||| ||| |||||||||||| || ||||| |||||| ||||    
T  14701489 ggataccatcaaatccgcatccgtatccatcaaatcacggatagttgaaatgtccgtttattttatccatgaatatctattaagatatc 14701577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 31618560 - 31618606
Alignment:
Q  244 tagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||| |||||||||||| || |||| |||||||||    
T  31618560 tagttagaaagggggatattggtgaggtgacacataaacaaagtgta 31618606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 304 - 476
Target Start/End: Original strand, 27337254 - 27337426
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattag 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  27337254 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtatctattaattag 27337353  T
Q  404 cgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggat 476  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27337354 cgggtagttaaaatatccatttattttattcgtggatatccattaaggtatccgctccgtgtccgtggcggat 27337426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 364 - 497
Target Start/End: Complemental strand, 1052873 - 1052740
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1052873 tgcggataccattaaatccacatccttatccattaattagcgggtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctccgt 1052774  T
Q  464 gtccgtggcggattttatccgcggatatccacag 497  Q
    |||||||||| ||||||||||| |||||||||||    
T  1052773 gtccgtggcgaattttatccgcagatatccacag 1052740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 367 - 500
Target Start/End: Original strand, 33189638 - 33189771
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||||||| ||| |||||| | |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33189638 ggataccattgaattcgcatctgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgctccgtgtc 33189737  T
Q  467 cgtggcggattttatccgcggatatccacagatg 500  Q
    ||||||||||||||||||||||||||||| ||||    
T  33189738 cgtggcggattttatccgcggatatccacggatg 33189771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 364 - 504
Target Start/End: Original strand, 36299119 - 36299259
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    ||||||||||||||||||  |||  | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  36299119 tgcggataccattaaatcaacatttgtatccattaattagcgggtagttaaaatattcatttattttatccatggatatccattaagatatccgctccgt 36299218  T
Q  464 gtccgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||||||| ||||||||||||| |||||||| ||||||||    
T  36299219 gtccgtggcagattttatccgcgaatatccacggatgcaga 36299259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 364 - 504
Target Start/End: Original strand, 47925151 - 47925291
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    ||||||||||||||||||| | | || ||||||||||||  |||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||    
T  47925151 tgcggataccattaaatccactttcgtatccattaattaatgggtagttaaaatatctatttattttatctaaggatatccattaaggtatccgttccgt 47925250  T
Q  464 gtccgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  47925251 gtccgtggcggattttatccgcggatatccacatatgcaga 47925291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 367 - 501
Target Start/End: Complemental strand, 11038996 - 11038862
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||| ||||  || ||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| ||||| ||||    
T  11038996 ggataccattaaatccgtatccatattcattaattagcgggtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgctccatgtc 11038897  T
Q  467 cgtggcggattttatccgcggatatccacagatgc 501  Q
    |||||||||||||||| || ||||||||| |||||    
T  11038896 cgtggcggattttatctgccgatatccacggatgc 11038862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 369 - 500
Target Start/End: Complemental strand, 30541295 - 30541170
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||     
T  30541295 ataccattaaatcggcatccatatccattaattagcgggtagttaaaatattcgtttattttatccatggatatccattaaggtatccgctccatgtcc- 30541197  T
Q  469 tggcggattttatccgcggatatccacagatg 500  Q
         |||||||||||| ||||||||| ||||    
T  30541196 -----gattttatccgcagatatccacggatg 30541170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 367 - 482
Target Start/End: Original strand, 7767314 - 7767429
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||| | |||||  |||||||||||| |||||||||||| |||| |||||||||| | |||||||||||||| ||||||||||| ||||    
T  7767314 ggataccattaaatctgaatccgtgtccattaattagggggtagttaaaaaatccgtttattttattcatggatatccattaaagtatccgctccatgtc 7767413  T
Q  467 cgtggcggattttatc 482  Q
    ||||||||||||||||    
T  7767414 cgtggcggattttatc 7767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 38440221 - 38440094
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| || | |||||||||||  |||||||||||||||||||| | ||| || |    
T  38440221 ggataccatcaaatccgcatccgtatccattaattagcgggtagttaaaaaattcgtttattttatctatggatatccattaaggtatctgttccatgcc 38440122  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
    |||||  ||||||||||||| ||||||||    
T  38440121 cgtgg-agattttatccgcgtatatccac 38440094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 359 - 484
Target Start/End: Complemental strand, 2943869 - 2943745
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    ||||||| ||||||||||||||| |||| || ||| ||||||||||||||||||||||||||| ||||||||| || |  |||||||||||||||| |||    
T  2943869 gcggatgtggataccattaaatctgcattcgtatc-attaattagcgggtagttaaaatatccgtttattttacccataaatatccattaaggtattcgc 2943771  T
Q  459 tccgtgtccgtggcggattttatccg 484  Q
    ||||| |||||  |||||||||||||    
T  2943770 tccgtatccgtaacggattttatccg 2943745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 369 - 476
Target Start/End: Original strand, 5973310 - 5973417
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||||||||| | ||||||||||||| || ||||||||| || | |||||||||||  ||||| |||||||||||||||| |||||| ||     
T  5973310 ataccattaaatccgcatctgtatccattaattagtggatagttaaaaaattcgtttattttatcaatggatttccattaaggtatccgttccgtgccca 5973409  T
Q  469 tggcggat 476  Q
    ||||||||    
T  5973410 tggcggat 5973417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 17026667 - 17026591
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| || |||| |||||||||    
T  17026667 agagagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgta 17026591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 23809485 - 23809405
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccatt 447  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | |  |||||||||||| || |||||||||    
T  23809485 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaacctgtttattttatccatgaatatccatt 23809405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 39073276 - 39073348
Alignment:
Q  218 agccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||| || |||| |||||||||    
T  39073276 agccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgta 39073348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 463
Target Start/End: Complemental strand, 22518991 - 22518891
Alignment:
Q  362 gatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctcc 461  Q
    |||||||||||||||||| || |||||| |||||||| || || ||||||||||||||   |||||||||||  |||||||||||||||||||  |||||    
T  22518991 gatgcggataccattaaacccacatccgtatccattattt-gcaggtagttaaaatatttgtttattttatctatggatatccattaaggtatttgctcc 22518893  T
Q  462 gt 463  Q
    ||    
T  22518892 gt 22518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 43427129 - 43427061
Alignment:
Q  411 ttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggatttt 479  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||||| || | || |||||||||    
T  43427129 ttaaaatatccatttattttattcatggatgtccattaaggtatccgctccatgcctgttgcggatttt 43427061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 47936372 - 47936455
Alignment:
Q  209 aaaagagagagccacatggtgaa--tgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||||||| |||||||| |||| ||| |||  ||||||||    
T  47936372 aaaagagaaagccacttggtgaaaatgcttagaaaattagttagaaaggggggcattggtgtggtgacatgtaagtaaagtgta 47936455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 2943936 - 2943880
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggat 364  Q
    ||||||||||||| | ||||| | |||||| |||||| |||| ||||||||||||||    
T  2943936 taggaagttgaaatgtattaatgttatttatgtaatttactcggtttaatagcggat 2943880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 326 - 501
Target Start/End: Original strand, 40057130 - 40057305
Alignment:
Q  326 taaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccattt 425  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  40057130 taaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatctattt 40057229  T
Q  426 attttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgc 501  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40057230 attttatccgtagatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacggatgc 40057305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 304 - 501
Target Start/End: Complemental strand, 39800334 - 39800121
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggata----------------ccattaaatccgcatc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                ||||||||||||||||    
T  39800334 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgcgggtgcagataccattaaatccgcatc 39800235  T
Q  388 cgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 487  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39800234 cgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 39800135  T
Q  488 atatccacagatgc 501  Q
    |||||||| |||||    
T  39800134 atatccacggatgc 39800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 332 - 492
Target Start/End: Complemental strand, 35188469 - 35188309
Alignment:
Q  332 tatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttatttta 431  Q
    |||||| |||||| |||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  35188469 tatttatgtaatttactcggtttaatagcgggtgtggataccactaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttatttta 35188370  T
Q  432 tccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatc 492  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35188369 tccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatc 35188309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 332 - 495
Target Start/End: Complemental strand, 39206978 - 39206815
Alignment:
Q  332 tatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttatttta 431  Q
    |||||| |||||| |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  39206978 tatttatgtaatttactcggtttaatagcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttatttta 39206879  T
Q  432 tccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccac 495  Q
    ||| | ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  39206878 tccatcgatatccattaaggtatccgctctgtgcccgtggcggattttatccgcggatatccac 39206815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 308 - 492
Target Start/End: Complemental strand, 33742584 - 33742401
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcggg 407  Q
    |||||||||||| |  ||||||| |||||| |||||| |||| |||||||||||| || |||||| |||| ||||||||| | |||||||||||| ||      
T  33742584 taggaagttgaatgatattaaggttatttatgtaatttactctgtttaatagcgggtgtggatacaattacatccgcatctgtatccattaattaacga- 33742486  T
Q  408 tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatc 492  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||| |||| ||||||||| ||||||||||| ||||||||    
T  33742485 tagttaaaaaatccatttattttatccatggatatcaattaaggtatccactccatgtccgtggaggattttatccacggatatc 33742401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 367 - 495
Target Start/End: Original strand, 3926514 - 3926642
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||||||||||||||||||| ||||||||||| |||  |||||||||| |||| |||||||||||| | ||||||||||||| ||||||||||||| |    
T  3926514 ggataccattaaatccgcatccacatccattaataagcatgtagttaaaaaatccgtttattttatccatagatatccattaagatatccgctccgtgcc 3926613  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
     ||||||||||||||| ||| ||||||||    
T  3926614 tgtggcggattttatctgcgaatatccac 3926642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 494
Target Start/End: Original strand, 23429557 - 23429682
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||||| |||| ||||| |||| | ||||||||||||||| |||||| ||||||||||    
T  23429557 ataccattaaatccgcatctgtatccattaattagcgagtagttaaaaaatccgtttatgttattcatggatatccattaagatatccgttccgtgtccg 23429656  T
Q  469 tggcggattttatccgcggatatcca 494  Q
    | ||||||||||||  ||||||||||    
T  23429657 tagcggattttatctacggatatcca 23429682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 42837853 - 42837953
Alignment:
Q  392 tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatat 491  Q
    ||||||| ||| ||| ||||||||| |||| |||||||||||| | ||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  42837853 tccattatttaacggatagttaaaaaatccgtttattttatccatagatatccattaagatatccgctctgtgtctgtggcgggttttatccgcggatat 42837952  T
Q  492 c 492  Q
    |    
T  42837953 c 42837953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 368 - 483
Target Start/End: Original strand, 39886987 - 39887102
Alignment:
Q  368 gataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 467  Q
    |||||||| ||||| ||||| | |||||||||||||| ||||||| |||||| | |||||||||||| || |||||||||||| |||||  || |||| |    
T  39886987 gataccatgaaatctgcatctgtatccattaattagcaggtagttgaaatattcgtttattttatccatgtatatccattaagatatccattctgtgttc 39887086  T
Q  468 gtggcggattttatcc 483  Q
    ||||||||||||||||    
T  39887087 gtggcggattttatcc 39887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 482
Target Start/End: Complemental strand, 42878761 - 42878646
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||||||||||||||||| |  ||||||||||||  ||||| |||||| |||| |||||||||||  ||||||| |||||| ||||| |||| |||||    
T  42878761 ggataccattaaatccgcattcatatccattaattaatgggtatttaaaaaatccgtttattttatctatggatattcattaaagtatctgctctgtgtc 42878662  T
Q  467 cgtggcggattttatc 482  Q
     ||| |||| ||||||    
T  42878661 tgtgacggagtttatc 42878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 483
Target Start/End: Original strand, 26621676 - 26621800
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||||||  |||||||||||||  ||||| |  ||  |||||||| |||||||||||||||   |||||||||||| | || |||||||||||||| |||    
T  26621676 gcggatggagataccattaaatatgcatctgtgtctgttaattagtgggtagttaaaatatttgtttattttatccatagacatccattaaggtatgcgc 26621775  T
Q  459 tccgtgtccgtggcggattttatcc 483  Q
    || || ||| |||| ||||||||||    
T  26621776 tctgtatccttggcagattttatcc 26621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 2209865 - 2209917
Alignment:
Q  360 cggatgcggataccattaaatccgcatccgcatccattaattagcgggtagtt 412  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||    
T  2209865 cggatgcgggtaccattaaatctgcatccgtatccattaattagtgggtagtt 2209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 304 - 501
Target Start/End: Original strand, 22215 - 22428
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagc----------------ggatgcggataccattaaatccgcatc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                || ||||||||||||||||||||||||    
T  22215 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatc 22314  T
Q  388 cgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 487  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22315 cgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 22414  T
Q  488 atatccacagatgc 501  Q
    |||||||| |||||    
T  22415 atatccacggatgc 22428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 304 - 501
Target Start/End: Complemental strand, 25293939 - 25293726
Alignment:
Q  304 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagc----------------ggatgcggataccattaaatccgcatc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                || ||||||||||||||||||||||||    
T  25293939 tttataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatc 25293840  T
Q  388 cgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 487  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25293839 cgtatccattaattagcgggtagttaaaatatccatttattttatctgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcgg 25293740  T
Q  488 atatccacagatgc 501  Q
    |||||||| |||||    
T  25293739 atatccacggatgc 25293726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 367 - 494
Target Start/End: Complemental strand, 29677420 - 29677293
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  29677420 ggataccattaaatccgcatccgtatccattaatttgcgggtagttaaaaaatccatttattttatccatggatatccattaaggtatcagctccgtgtc 29677321  T
Q  467 cgtggcggattttatccgcggatatcca 494  Q
    ||| || |||||||||||||||||||||    
T  29677320 cgttgcagattttatccgcggatatcca 29677293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 367 - 495
Target Start/End: Complemental strand, 31585048 - 31584920
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31585048 ggatatcattaaatccgcatccgtatccattaattagcgggtagttaaaaaacccatttattttatccatggatatccattaaggtatccgttccgtgtc 31584949  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
    | |||||||||||||| ||||||||||||    
T  31584948 catggcggattttatctgcggatatccac 31584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 42332719 - 42332515
Alignment:
Q  86 taatggatagtggaaggagttacaaagcttagtcaatcatcagttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataa 185  Q
    ||||| ||||||||||||||||||||||| | || ||  |||||||||||||||||| |||||||||| | ||||      ||||||||| |||||||||    
T  42332719 taatgaatagtggaaggagttacaaagctcactctattttcagttacatatttaagaattataagaattaacata------tgtaaatatgtagtaataa 42332626  T
Q  186 atagat----ggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatata 279  Q
    ||||||    ||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||  |||||||||||||||| ||    
T  42332625 atagatagatggaaaatagggaaaaggaaaagagagagccacatggtgaatgcttatagaaaattagttagaaagaggggtattggtgaggtgtcatgta 42332526  T
Q  280 atcaaagtgta 290  Q
    | |||||||||    
T  42332525 accaaagtgta 42332515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 328 - 504
Target Start/End: Original strand, 25987628 - 25987804
Alignment:
Q  328 aggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttat 427  Q
    |||||||||| |||||| | || |||||||||||| || |||||||||||||||| |||  | |||||||||||||||||||||||||| || |||||||    
T  25987628 aggatatttatgtaatttaatcggtttaatagcgggtgtggataccattaaatccacatttgtatccattaattagcgggtagttaaaaaattcatttat 25987727  T
Q  428 tttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||||| | |||||||||||||||||| ||| |||| | ||| |||||| ||||||||| ||||||| ||||||||    
T  25987728 tttatccatagatatccattaaggtatctgcttcgtgcctgtgacggattatatccgcgggtatccacggatgcaga 25987804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 11894579 - 11894703
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||| ||||||||||||||  |||||||||||||| ||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||| |    
T  11894579 ggataccgttaaatccgcatccatatccattaattagcaggtagttaaaaaattcatttattttatccattgatatccattaaggtatccgctccgtgcc 11894678  T
Q  467 cgtggcggattttatccgcggatat 491  Q
    |||| |||||| |||||||||||||    
T  11894679 cgtgacggattatatccgcggatat 11894703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 373 - 495
Target Start/End: Complemental strand, 48378888 - 48378766
Alignment:
Q  373 cattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggc 472  Q
    ||||||||||||||  | |||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||| |||||      
T  48378888 cattaaatccgcatatgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatattcattaagctatccgctccgtgcccgtgat 48378789  T
Q  473 ggattttatccgcggatatccac 495  Q
    |||||||||||||||||||||||    
T  48378788 ggattttatccgcggatatccac 48378766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 47141130 - 47141228
Alignment:
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 489  Q
    |||||||||||| |||||||| |||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141130 atccattaattaacgggtagtaaaaaaatccgcttattttatccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 47141228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 359 - 476
Target Start/End: Complemental strand, 2191608 - 2191491
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||| |||||||||||||||||| ||||| | |||||||||||| | ||||| |||||||||| |||||||||||| |||||||||||||| ||||||||    
T  2191608 gcgggtgcggataccattaaatctgcatctgtatccattaattaacaggtagataaaatatccgtttattttatccatggatatccattaaagtatccgc 2191509  T
Q  459 tccgtgtccgtggcggat 476  Q
    ||| | ||||||||||||    
T  2191508 tccatatccgtggcggat 2191491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 406 - 495
Target Start/End: Complemental strand, 17562603 - 17562514
Alignment:
Q  406 ggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccac 495  Q
    ||||||||||| ||  ||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  17562603 ggtagttaaaaaatttatttattttatctatggatatccattaaggtatccgctccgtgtccatggcagattttatccgcggatatccac 17562514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 487
Target Start/End: Original strand, 15379073 - 15379181
Alignment:
Q  379 atccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattt 478  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||  |||  |||| |||||| || |||||||    
T  15379073 atccgtatccgtatccattaattagcgggcagttaaaatatccgtttatttgatccatggatatccattaaaatatatgctcggtgtccatgacggattt 15379172  T
Q  479 tatccgcgg 487  Q
    |||||||||    
T  15379173 tatccgcgg 15379181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 42507372 - 42507300
Alignment:
Q  423 tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccac 495  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  42507372 tttattttatccatggatatccattaaggtatccgctccgtgtcagtggcagattttattcgcggatatccac 42507300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 501
Target Start/End: Complemental strand, 36728618 - 36728540
Alignment:
Q  423 tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgc 501  Q
    |||||||||||| || || ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  36728618 tttattttatccatgtatgtccatgaagatatccgctccgtgtctgtggcggattttatccgcggatatccacggatgc 36728540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 38264145 - 38264075
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattt 429  Q
    |||| ||||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||||    
T  38264145 gcgggtgcggataccattaaattcacatccatatccattaattagcgggtagttaaaatatccatttattt 38264075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 39621743 - 39621667
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||| || |||| |||||||||    
T  39621743 agagagccacatggagaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgta 39621667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 339 - 504
Target Start/End: Original strand, 52252863 - 52253028
Alignment:
Q  339 gtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtgg 438  Q
    |||||| ||||||||||||| | |||| | ||||||| | ||| |||| || ||  ||||||||||   ||||| ||||||| ||||||||||||  ||     
T  52252863 gtaatttactcagtttaataacagatgtgaataccatgatatctgcattcgtatttattaattagcatatagttgaaatatctatttattttatctatga 52252962  T
Q  439 atatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||  ||||||||||||| || ||||||||| | ||||||||||  |||||||||| | ||||||    
T  52252963 atatttattaaggtatccgttctgtgtccgtgacagattttatccatggatatccacgggtgcaga 52253028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 22909414 - 22909486
Alignment:
Q  183 taaatagatggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaa 253  Q
    |||||||||| ||||  || ||||||||||||||||||||||||||||||| |  |||||||| |||||||||    
T  22909414 taaatagatgaaaaaaggaaaaaaagaaaagagagagccacatggtgaatgtttatagaaaataagttagaaa 22909486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 15378980 - 15379034
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgg 362  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||||    
T  15378980 taggaagttgaaaggtattaaggttatttatgtaatttactcaatttaatagcgg 15379034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 307 - 501
Target Start/End: Complemental strand, 9157 - 8947
Alignment:
Q  307 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaata----------------gcggatgcggataccattaaatccgcatccgc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| |||||||||||||||||| |||||||     
T  9157 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt 9058  T
Q  391 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggata 490  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9057 atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggata 8958  T
Q  491 tccacagatgc 501  Q
    ||||| |||||    
T  8957 tccacggatgc 8947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 32208069 - 32207865
Alignment:
Q  86 taatggatagtggaaggagttacaaagcttagtcaatcatcagttacatatttaagagttataagaatgagcataagcaaatgtaaatatttagtaataa 185  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||||| |||| | ||||    ||||||||||||||    
T  32208069 taatggatagtggaaggagttacaaagctcactcaattatcagttacatatttaagaattataagaatgaacatatgtaaat----atatttagtaataa 32207974  T
Q  186 ----atagatggaaaatagagaaaaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatata 279  Q
        ||||||||||| ||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||||| ||| ||    
T  32207973 atagatagatggaaagtag-gaaaaagaaaagagagagccacatggtgaatgcttataaaaaattagttagaaaggggga-attggtgaggtgacatgta 32207876  T
Q  280 atcaaagtgta 290  Q
    | |||||||||    
T  32207875 agcaaagtgta 32207865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 367 - 504
Target Start/End: Complemental strand, 8227051 - 8226914
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| ||||||| |    
T  8227051 ggataccattaaatccgcatccgtatctattaattagcgggtagttaaaagatccgtttattttatccatgtatatccattaaggtatccactccgtgcc 8226952  T
Q  467 cgtggcggattttatccgcggatatccacagatgcaga 504  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  8226951 cgtgacggattttatccgcggatatccacggatgcaga 8226914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 361 - 495
Target Start/End: Complemental strand, 9762743 - 9762609
Alignment:
Q  361 ggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc 460  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||| ||||||||||| |||  |||||||||||| |||||||||||||||||||||||||    
T  9762743 ggatgtggataccatcaaatccgcatccatatccattaattagcaggtagttaaaaaatctgtttattttatccatggatatccattaaggtatccgctc 9762644  T
Q  461 cgtgtccgtggcggattttatccgcggatatccac 495  Q
    |||| |||||||||||||||||||| |||||||||    
T  9762643 cgtgcccgtggcggattttatccgcagatatccac 9762609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 36582740 - 36582614
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    |||| |||||||||||||||| ||||||||||||| || ||||||||| |||| |||||||||| | ||||||||||||||| |||||||||||||| ||    
T  36582740 atactattaaatccgcatccgtatccattaattagtggatagttaaaaaatccgtttattttattcatggatatccattaagatatccgctccgtgttcg 36582641  T
Q  469 tggcggattttatccgcggatatccac 495  Q
    |||||||||||||||||||||||||||    
T  36582640 tggcggattttatccgcggatatccac 36582614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 487
Target Start/End: Complemental strand, 28211725 - 28211605
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||| ||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||| |||||    
T  28211725 ggatactattaaatccgcattcgtatccattaattagtgggtagttaaaatatccgtttattttatccatagatatccattaaagtatctgctctgtgtc 28211626  T
Q  467 cgtggcggattttatccgcgg 487  Q
    |||||||||||||||||||||    
T  28211625 cgtggcggattttatccgcgg 28211605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 369 - 484
Target Start/End: Complemental strand, 7987011 - 7986896
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  7987011 ataccattaaatccgcatccgtatccattaattagcaggtagttgacaaatccgtttattttatccatggatatccattaaggtatccgctccatgtccg 7986912  T
Q  469 tggcggattttatccg 484  Q
    | ||||||||||||||    
T  7986911 tagcggattttatccg 7986896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 392 - 494
Target Start/End: Original strand, 31006377 - 31006479
Alignment:
Q  392 tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggatat 491  Q
    ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||    
T  31006377 tccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaagatatccgctccatgtccgtggcggattttatccacagatat 31006476  T
Q  492 cca 494  Q
    |||    
T  31006477 cca 31006479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 369 - 476
Target Start/End: Complemental strand, 7968270 - 7968163
Alignment:
Q  369 ataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 468  Q
    |||||||||||||||||| || |||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||| ||||    
T  7968270 ataccattaaatccgcatgcgtatccattaattagcgggtagttgaaaaatccgtttattttatccatggatatccattaaggtatccgctacgtatccg 7968171  T
Q  469 tggcggat 476  Q
    | ||||||    
T  7968170 tagcggat 7968163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 44212315 - 44212210
Alignment:
Q  168 gtaaatatttagtaataaatagatggaaaatagagaaaaagaaaagagagagccacat-ggtgaatgcttagaaaattagttagaaagggggacattggt 266  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||||||| || ||| |||||||    
T  44212315 gtaaatatttagtaataaatagatggaaaatagggaaaaagaaaagagagagacagatgggcgaatgcttagaaaattagttagagagaggggcattggt 44212216  T
Q  267 gaggtg 272  Q
    ||||||    
T  44212215 gaggtg 44212210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 32664082 - 32664000
Alignment:
Q  208 gaaaagagagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  | |||||||||||| || |||| |||||||||    
T  32664082 gaaaagagagagccacatgatgaatgcttagaaaattagttagaaagggaaaaattggtgaggtgacacataagcaaagtgta 32664000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 359 - 491
Target Start/End: Original strand, 11481729 - 11481862
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaata-tccatttattttatccgtggatatccattaaggtatccg 457  Q
    ||||||| ||||||| |||||||| |||||  ||||||||||||||  |||||||||| | ||| |||||||||||  ||||||| ||| || |||||||    
T  11481729 gcggatgtggataccgttaaatccacatccatatccattaattagcaagtagttaaaaaaatccgtttattttatcgatggatattcatcaaagtatccg 11481828  T
Q  458 ctccgtgtccgtggcggattttatccgcggatat 491  Q
    ||||||  ||||||| |||||||||| |||||||    
T  11481829 ctccgtacccgtggcagattttatccacggatat 11481862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 28841699 - 28841626
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagt 287  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| || |||| ||||||    
T  28841699 agagagccacatggtgaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagt 28841626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 6870414 - 6870295
Alignment:
Q  364 tgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 463  Q
    |||||||||||||||||| ||||  | ||| |||||||| |||||||||||| |||   |||||||||||| ||||||||||||||| |||||| || ||    
T  6870414 tgcggataccattaaatctgcatatgtatcaattaattaacgggtagttaaattatatgtttattttatccatggatatccattaagatatccgttctgt 6870315  T
Q  464 gtccgtggcggattttatcc 483  Q
     ||| ||  |||||||||||    
T  6870314 atccttgaaggattttatcc 6870295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 9083093 - 9083140
Alignment:
Q  207 agaaaagagagagccacatggtgaatgcttagaaaattagttagaaag 254  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  9083093 agaaaagagagagccacgtggtgaatgcttagaaaattagttaaaaag 9083140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 28211800 - 28211747
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcg 361  Q
    ||||||||||||||| ||||||| |||||| |||||| |||  |||||||||||    
T  28211800 taggaagttgaaaggtattaaggttatttatgtaatttacttggtttaatagcg 28211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 367 - 495
Target Start/End: Original strand, 7622622 - 7622750
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||||| |||||||||||||||||||  ||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  7622622 ggataccattaaatccgcatccgtatccattaattagcgggtaaataaaaaatccgtttattttatccatggatatccattaaggtatccgctccgcgtc 7622721  T
Q  467 cgtggcggattttatccgcggatatccac 495  Q
    |||||||||||||||||||||||||||||    
T  7622722 cgtggcggattttatccgcggatatccac 7622750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 641848 - 641713
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||||||||| ||||||||||||| |||  | |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||  |||||||    
T  641848 gcggatgcggttaccattaaatcctcatatgtatccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaaaatatccgc 641749  T
Q  459 tccgtgtccgtggcggattttatccgcggatatcca 494  Q
    ||||||||||||| | |||||||||||| |||||||    
T  641748 tccgtgtccgtggtgaattttatccgcgaatatcca 641713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 368 - 501
Target Start/End: Complemental strand, 35167096 - 35166963
Alignment:
Q  368 gataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 467  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||  |||||     
T  35167096 gataccattaaatccacatccgtatcaattaattagcgggtagttaaaatatccgtttattttatccatggatatctattaaggtatccgctttgtgtct 35166997  T
Q  468 gtggcggattttatccgcggatatccacagatgc 501  Q
    |||| ||||||||||||| |||||| || |||||    
T  35166996 gtggtggattttatccgctgatatctacggatgc 35166963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 359 - 495
Target Start/End: Complemental strand, 10408760 - 10408624
Alignment:
Q  359 gcggatgcggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 458  Q
    |||||||||||| ||| |||||| ||||| | ||| | || ||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||    
T  10408760 gcggatgcggatgccaataaatctgcatctgtatctactatttagcgggtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgc 10408661  T
Q  459 tccgtgtccgtggcggattttatccgcggatatccac 495  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  10408660 tccgtttccgtggcggattttatctgcggatatccac 10408624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 367 - 504
Target Start/End: Original strand, 10788796 - 10788932
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||| ||||||||| |||  | |||||||||||||| ||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| |    
T  10788796 ggatactattaaatccacatttgtatccattaattagcaggtagttaaaa-attcgtttattttatccatggatatccattaaggtatccgctccgtgcc 10788894  T
Q  467 cgtggcggattttatccgcggatatccacagatgcaga 504  Q
    ||||||| ||||||||||||||||||||| | ||||||    
T  10788895 cgtggcgaattttatccgcggatatccacgggtgcaga 10788932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 367 - 470
Target Start/End: Original strand, 28582484 - 28582587
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    |||||| |||||||||| ||  | ||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  28582484 ggatactattaaatccgtatttgtatccactaattaacgggtagttaaaatatccgtttattttatccatggatatccatcaaggtatccgctccgtgtc 28582583  T
Q  467 cgtg 470  Q
    ||||    
T  28582584 cgtg 28582587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 18880935 - 18880859
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||| || |||| |||||||||    
T  18880935 agagagccacatggagaatgcttagaaaattagttagagaggggggaattggtgaggtgacacataagcaaagtgta 18880859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 8643487 - 8643610
Alignment:
Q  166 atgtaaatatttagtaataaatagatggaaaatag-agaaaaagaaaagagagagccacatggtgaatgctt--agaaaattagttagaaagggggacat 262  Q
    |||||||||||||||||   ||| ||| |||| || ||||||||||||||||||||||||||||||||||||  ||||||| | ||||||| |||| |||    
T  8643487 atgtaaatatttagtaa---ataaatgaaaaaaaggagaaaaagaaaagagagagccacatggtgaatgcttaaagaaaataaattagaaaagggg-cat 8643582  T
Q  263 tggtgaggtgtcatataatcaaagtgta 290  Q
    | |||||||| ||| ||| |||| ||||    
T  8643583 ttgtgaggtgacatgtaagcaaaatgta 8643610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 16853526 - 16853445
Alignment:
Q  209 aaaagagagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||| |||||| |||||||||||||||||||||||||||||  ||  |||||||| |||| ||| ||| |||||||||    
T  16853526 aaaagagaaagccacttggtgaatgcttagaaaattagttagaaaatggagcattggtgtggtgacatgtaagcaaagtgta 16853445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 32545700 - 32545668
Alignment:
Q  205 aaagaaaagagagagccacatggtgaatgctta 237  Q
    |||||||||||||||||||||||||||||||||    
T  32545700 aaagaaaagagagagccacatggtgaatgctta 32545668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 434
Target Start/End: Original strand, 8577058 - 8577125
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatcc 434  Q
    ||||||||||||||| ||||| | |||||||||||| ||| | ||||||| | || ||||||||||||    
T  8577058 ggataccattaaatctgcatctgtatccattaattaacggttggttaaaaaaaccgtttattttatcc 8577125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 641914 - 641859
Alignment:
Q  308 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggat 364  Q
    ||||||||||||||  |||| || |||||| |||||| |||||||||||||||||||    
T  641914 taggaagttgaaagttatta-ggttatttatgtaatttactcagtttaatagcggat 641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 367 - 504
Target Start/End: Complemental strand, 6756 - 6619
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||||||||| | ||||||||||||  || |||||| || ||||||||||||||||| ||||||| ||||||| ||| || |||||| |    
T  6756 ggataccattaaatccgcatctgtatccattaattaatggttagttagaaaatccatttattttatccatggatattcattaagatattcgttccgtgcc 6657  T
Q  467 cgtggcggattttatccgcggatatccacagatgcaga 504  Q
    |||| ||||||||||||||| |||||||| ||||||||    
T  6656 cgtgacggattttatccgcgaatatccactgatgcaga 6619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 367 - 492
Target Start/End: Original strand, 66858 - 66983
Alignment:
Q  367 ggataccattaaatccgcatccgcatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 466  Q
    ||||||||||||||  | ||||  || ||| |||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  66858 ggataccattaaatatgtatccatattcatcaattagagggtagataaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtc 66957  T
Q  467 cgtggcggattttatccgcggatatc 492  Q
     ||| | |||||||||| ||||||||    
T  66958 tgtgacagattttatccacggatatc 66983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 46338 - 46413
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||  ||||||||    
T  46338 agagagccacgtggtgaatgcttagaaaattagttagaaa-ggggaaattggtgaggtgacacataagtaaagtgta 46413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 152449 - 152374
Alignment:
Q  214 agagagccacatggtgaatgcttagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||  ||||||||    
T  152449 agagagccacgtggtgaatgcttagaaaattagttagaaa-ggggaaattggtgaggtgacacataagtaaagtgta 152374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 1960 - 1873
Alignment:
Q  205 aaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||||||  ||||| || ||||||||| |||| |||| ||||| || ||| ||| |||||||||    
T  1960 aaagaaaagagagagccacatggtgaatgcttatagaatataagttagaaaagggggcatttgtgagatgacatgtaagcaaagtgta 1873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 5346 - 5432
Alignment:
Q  205 aaagaaaagagagagccacatggtgaatgct--tagaaaattagttagaaagggggacattggtgaggtgtcatataatcaaagtgta 290  Q
    |||||||||||||||||||||||||||| ||  ||||| || ||||||||| |||| |||| ||||| || ||| ||| |||||||||    
T  5346 aaagaaaagagagagccacatggtgaatacttatagaatataagttagaaaagggg-catttgtgagatgacatgtaagcaaagtgta 5432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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