View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_high_34 (Length: 237)
Name: NF18527_high_34
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 51662063 - 51661833
Alignment:
| Q |
18 |
gtttctccgtcaagtattgtggtttgtgagataaaggtcggatg--atgcccggacctaaatgacgttctccggcattgatggtgnnnnnnngcttgtac |
115 |
Q |
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| T |
51662063 |
gtttctccgtcaagtatcgtggtttgtgagataaaggtcggatgatatgcccggacctaaatgacgttctccggcattgatggtgtttttttgcttgtac |
51661964 |
T |
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| Q |
116 |
ttggtggatctaaaatttaaatggccatggtgtgg----------------aggtggatttggtgttttgttaaagtcataatgagagattgacaacaaa |
199 |
Q |
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| T |
51661963 |
tgggtggatctaaaatttaaatggccatggtgtggttgaacagaaggtttatggtggatttggtgttttgttaaagtcataatgagagattgacaacaaa |
51661864 |
T |
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| Q |
200 |
tttgaagttgagtggttgttgatggtggtgg |
230 |
Q |
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| T |
51661863 |
tttgaagttgagtggttgttgatggaggtgg |
51661833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 44976488 - 44976356
Alignment:
| Q |
18 |
gtttctccgtcaagtattgtggtttgtgagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgatggtgnnnnnnngcttgtactt |
117 |
Q |
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| T |
44976488 |
gtttctccgtcaagtatcgtggtttgtaagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgaaggtgtttttttgcttgtactt |
44976389 |
T |
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| Q |
118 |
ggtggatctaaaatttaaatggccatggtgtgg |
150 |
Q |
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| T |
44976388 |
ggtggatctaaaatttaaatggccatggtgtgg |
44976356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 44976327 - 44976248
Alignment:
| Q |
151 |
aggtggatttggtgttttgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgttgatggtggtgg |
230 |
Q |
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| T |
44976327 |
aggtggatttagtgttttgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgttgatggaggtgg |
44976248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 40029020 - 40029052
Alignment:
| Q |
196 |
caaatttgaagttgagtggttgttgatggtggt |
228 |
Q |
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| T |
40029020 |
caaatttgaacttgagtggttgttgatggtggt |
40029052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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