View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_10 (Length: 402)
Name: NF18527_low_10
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 30467463 - 30467849
Alignment:
| Q |
16 |
ataagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatca |
115 |
Q |
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| T |
30467463 |
ataagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatca |
30467562 |
T |
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| Q |
116 |
agcagagtaaccaagatcacatattattaaaaatccaattgttcttagtgttgtctaatctcatcatcaaccctcttttactttaacaactttgattata |
215 |
Q |
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| T |
30467563 |
agcagagtaaccaagatcacatattattaaaaatccaattgttcttagtgttgtctaatctcatcatcaaccctcttttactttaacaactttgattata |
30467662 |
T |
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| Q |
216 |
agttatgccctaataggaaatcactaggatggccaagaaacgttggacttacttctttgagaaaatattcgagtgcttacacctttatcatctttccgtt |
315 |
Q |
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| T |
30467663 |
agttatgccctaataggaaatcactaggatggccaagaaacgttggacttacttctttgagaaaatattcgagtgcttacacctttattatctttccgtt |
30467762 |
T |
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| Q |
316 |
gatcaatatttaaacgacacagccatgtgcaattaatcgcttattatatcaccatgttgaaacacaagaatatcgtctcacgtggga |
402 |
Q |
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| T |
30467763 |
gatcaatatttaaacgacacatccatgtgcaattaatcgcttattatatcaccatgttgaaacacaagaatatcgtctcacgtggga |
30467849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 16648204 - 16648352
Alignment:
| Q |
31 |
atcggcagtttttccacactgccaaaaccatgagatggagagaagatagtttacatagtggaagaatttagcattttcttaatcaagcagagtaaccaag |
130 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16648204 |
atcgccagtttttccacacagccaaaaacatgagatggagagaagacagtttacgtagtggaagaatttagcattatcttaatcaagcagagtaaccaag |
16648303 |
T |
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| Q |
131 |
atcacatattattaaaaatccaattgttcttagtgttgtctaatctcat |
179 |
Q |
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| T |
16648304 |
attacatataattaaaaatccaattactcttagtgttttctaatctcat |
16648352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 45863514 - 45863610
Alignment:
| Q |
17 |
taagtgataaagtgatcggcagtttttccacactgccaaaaccatgagatg---gagagaagatagtttacatagtggaagaatttagcattttctt |
110 |
Q |
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| T |
45863514 |
taagtggtaaagtgatcggcagtttttcgacacagccaaaaacatgagatgcaggagagaagatagtttacatagtagaagaatttagcattttctt |
45863610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 45863863 - 45863935
Alignment:
| Q |
230 |
aggaaatcactaggatggccaagaaacgttggactt-acttctttgagaaaatattcgagtgcttacaccttt |
301 |
Q |
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| T |
45863863 |
aggaaatcactaggataaccaagagacgttggactttacttctttgagaaaatattcgagtgcttacaccttt |
45863935 |
T |
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