View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_11 (Length: 401)
Name: NF18527_low_11
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 15301969 - 15302115
Alignment:
| Q |
13 |
aaaatcactaacaactcaaatcactagaacattacgacattattatgagtgacacaatattaatccacaaatcataataaatgcatcacagtacaatgct |
112 |
Q |
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| T |
15301969 |
aaaatcacaaacaactcctatcgttagaacattacgacattattatgagtgacacaatattaatacacaaatcataataaatgcatcacaatacaatgct |
15302068 |
T |
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| Q |
113 |
cacatactctacttgtatgcatgtgatactgaatacaataactaacg |
159 |
Q |
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| T |
15302069 |
cacatactctacttgtatgcatgtgatactgaattcaataactaacg |
15302115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 15302151 - 15302192
Alignment:
| Q |
334 |
ggagggctaggtgttagagttgttatcaatttgagtctccta |
375 |
Q |
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| T |
15302151 |
ggagggctaggtgttagagttgttatcaatttgagtctccta |
15302192 |
T |
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