View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_13 (Length: 385)
Name: NF18527_low_13
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 21076855 - 21077097
Alignment:
| Q |
17 |
tcacaattaagctgattatagctaaagtctgaagaagctttccaaaacatgtatggtcaggtagacnnnnnnntaagagaaattgtgcggaatctgagag |
116 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
21076855 |
tcacaattaagctgaatatagctaaagtttgaagaagctttccaaaacatgtatggccaggtagacaaaaaaataagagaaattgtgcggaatttgagag |
21076954 |
T |
|
| Q |
117 |
gatatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatcaattagcc |
216 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21076955 |
ggtatttcagacaccatattgaaaaatctcacagttaatggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatcaattaact |
21077054 |
T |
|
| Q |
217 |
aaatgcaggaaatacttaaatggattgggacacaacttctaag |
259 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21077055 |
aaatgcaaaaaatacttaaatggattgggacacaacttctaag |
21077097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 21022925 - 21023175
Alignment:
| Q |
19 |
acaattaagctgattatagctaaagtctgaa-gaagctttccaaaacatgtatggtcaggtagacnnnnnnntaa-----gagaaattgtgcggaatctg |
112 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||| || |||||||||||| |||| || |
|
|
| T |
21022925 |
acaattaagttgattatagctaaattctgaaagaagctttccaaaacatgtatggccagatagacaaaaaaaaaaaaaaagagaaattgtgcagaatttg |
21023024 |
T |
|
| Q |
113 |
agaggatatctcagacaccatattgaaaaatctcacagttagt---ggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatca |
209 |
Q |
| |
|
|||| |||||||| |||| ||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||| | || ||||||||| |
|
|
| T |
21023025 |
agagagtatctcaggcaccttattggaaaatctcacagtgagtaggggggactgtactagcccagttaaataaaacttaagttttaaacccgatcaatca |
21023124 |
T |
|
| Q |
210 |
attagccaaatgcaggaaatacttaaatggattgggacacaacttctaagt |
260 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21023125 |
attagctaaatgcaggaaatacttaaatggattggggcacaacttctaagt |
21023175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 21023464 - 21023529
Alignment:
| Q |
255 |
ctaagtcccacttccctctaatagcttgttttgattatgcacacaggttatcattagggtaacaaa |
320 |
Q |
| |
|
||||| |||||||||| | | ||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
21023464 |
ctaagccccacttccccccagtagcttgttttgagtatgcacataggttatcattagggtaacaaa |
21023529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 21024301 - 21024357
Alignment:
| Q |
325 |
cttctacctgttctatcatgcatcaaactacttcaaatcacaacatattattggaca |
381 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||||||| |||||| |||||| |
|
|
| T |
21024301 |
cttctacatgttatatcatgcatcaaactacttaaaatcacaaaatattactggaca |
21024357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 21806760 - 21806803
Alignment:
| Q |
106 |
gaatctgagaggatatctcagacaccatattgaaaaatctcaca |
149 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
21806760 |
gaatctaagaggatatctcagacaccatattaaaaaatatcaca |
21806803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 33699824 - 33699737
Alignment:
| Q |
90 |
taagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtta |
177 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
33699824 |
taagagaaagtgtgcagaatctgagagggtatctcagacaccatattggaaaatctcacagttagtggagaccatactagcctagtta |
33699737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 260701 - 260759
Alignment:
| Q |
91 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
149 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
260701 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
260759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 655220 - 655162
Alignment:
| Q |
91 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
149 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
655220 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
655162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 840955 - 840897
Alignment:
| Q |
91 |
aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca |
149 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
840955 |
aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca |
840897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 25427550 - 25427493
Alignment:
| Q |
119 |
tatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtt |
176 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| |||||| |||| |||||||||||| |
|
|
| T |
25427550 |
tatctcaagcaccagattgaaaaatctcaaagtcagtggagactggactagcccagtt |
25427493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University