View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_14 (Length: 382)
Name: NF18527_low_14
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 69 - 368
Target Start/End: Complemental strand, 21022744 - 21022443
Alignment:
| Q |
69 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgactgtgagcttctccgg-cacag |
167 |
Q |
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| T |
21022744 |
gggacagagcttacagtaatctaagttattgctaggatacattattttgatgatgatggattagtccagtcccagtgactatgagcttctcccgacacag |
21022645 |
T |
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| Q |
168 |
agaagatctatcagaa-cttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcataagctaaagaccttaaaaccctataacaaaat |
266 |
Q |
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| T |
21022644 |
agaagatctatcagaagcttaaggttatcatacaacaaattaacaagtaacaaaatagaggttatcatatgttaaagaccttaaaaccctataacaaaat |
21022545 |
T |
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| Q |
267 |
gaacaattggagctgtcatattttagggacacaacttctaatctcaaatttttgttcaatcttattcttcaattttctagtgcatatgagatagtttctg |
366 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21022544 |
gaacaattggagctatcatattttggggacacaacttctaatctcaaatttttgttcaatcttattcttcaattttctagtgcatatgagattgtttctg |
21022445 |
T |
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| Q |
367 |
at |
368 |
Q |
| |
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|| |
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| T |
21022444 |
at |
21022443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 21076676 - 21076484
Alignment:
| Q |
69 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgactgtgagcttctccggcacaga |
168 |
Q |
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| T |
21076676 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgaccgtgagcttctccggcacaga |
21076577 |
T |
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| Q |
169 |
gaagatctatcagaacttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcataagctaaagaccttaaaaccctataac |
261 |
Q |
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| T |
21076576 |
gaagatctatcagaacttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcataagctaaagaccttaaaaccctataac |
21076484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21022886 - 21022832
Alignment:
| Q |
17 |
ctatatttcgttgtatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
71 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21022886 |
ctatatttcgttatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
21022832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21076818 - 21076764
Alignment:
| Q |
17 |
ctatatttcgttgtatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
71 |
Q |
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| T |
21076818 |
ctatatttcgctatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
21076764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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