View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_21 (Length: 316)
Name: NF18527_low_21
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_21 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 5348918 - 5348613
Alignment:
| Q |
1 |
ttctttataccattcagaataatcaattccagttctaataattttttggtccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5348918 |
ttctttataccattcagaataatcaattccagttctaataattttttggtccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaacc |
5348819 |
T |
|
| Q |
101 |
ttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgttgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttga |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5348818 |
ttacaaactcctcaaagctatttcattggaaccaaggtgatgatgattgttgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttga |
5348719 |
T |
|
| Q |
201 |
tcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttttcagcctgcaatatctgcagagtctgaatttggcttttaatgactttcgt |
300 |
Q |
| |
|
||||||||| |||||||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
5348718 |
tcttagtcatgagtctatttccggaggacttgacaattcaagtgctcttttcagcttgcaatatctgcagagtctgaatttggcttttaatgattttcgt |
5348619 |
T |
|
| Q |
301 |
tctgtg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
5348618 |
tctgtg |
5348613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 5410305 - 5410560
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||| || | ||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
5410305 |
ccatgaacattctttgttgctccaattgaaaaacagtctgatattcaaccccacaaaatcttcaaagctagttcattggaaccaaagtgatgatgattgt |
5410404 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||||| ||||| ||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
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|
| T |
5410405 |
tgccaatggcacggggtgacatgtaaacagggacatgttacagtccttgatcttagtcaagagtctatctccggaggacttaatgattcaagtgctcttt |
5410504 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttttaatgactttcgttctgtg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5410505 |
tcagcctgcaatatctgcagagtctgaatttggcttttaatcactttcgttctgtg |
5410560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 51 - 287
Target Start/End: Original strand, 5500059 - 5500295
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||| || |||||||||||||| || || |||||||| |
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|
| T |
5500059 |
ccatgaacgttccttgttgctccaattgaaaaacaacctaatattcaaccccacaaaatcctcaaagttagttcattggaaccaaagtaattatgattgt |
5500158 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |
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|
| T |
5500159 |
tgccaatggcatggggtaacatgcaaagatggacatgtgacagcccttgatcttagtcaagagtctatctcaggaggacttaatgattcaagtgctctat |
5500258 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttt |
287 |
Q |
| |
|
||||| ||||| | ||||||| |||||||||||||| |
|
|
| T |
5500259 |
tcagcttgcaagacttgcagagcctgaatttggcttt |
5500295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 51 - 306
Target Start/End: Original strand, 5352193 - 5352448
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||| | ||||||| |||||| ||||| ||| | |||||||| ||| |||| |||||||| |
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|
| T |
5352193 |
ccatcaacgttcgttgttgctccaattgaaaaacaaccttatattcaaccccgaaaaatcttcaaaactagtgcattggaatcaaagtgaatatgattgt |
5352292 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||| ||| |
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|
| T |
5352293 |
tgcaaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaagtgctattt |
5352392 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttttaatgactttcgttctgtg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5352393 |
tcagcctgcaatatctgcagagtctgaatttggcatttaatgactttcattctgtg |
5352448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 51 - 291
Target Start/End: Original strand, 5376539 - 5376779
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||| |||||| | | ||||||| | |||||| ||||||||| |||||||||||||| |||| |||||||| |
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|
| T |
5376539 |
ccatcaacgtgccttgttgctccaattgaagaacaacttgatattcaaccctgaaaaatcttcaaagctagttcattggaaccaaagtgaatatgattgt |
5376638 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||| ||| |
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|
| T |
5376639 |
tgcaaatggcatggtgtaacatgcaaagatggacatgttacagcccttgatcttagtcgagagtctatttccggaggacttaacgattcaagtgccattt |
5376738 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttttaat |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5376739 |
tcagcctgcaatatctgcagggtctgaatttggcttttaat |
5376779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 51 - 287
Target Start/End: Original strand, 5390859 - 5391095
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| | |||||| || ||| ||||||||| |||||||||| ||| |||| |||||||| |
|
|
| T |
5390859 |
ccatcaacgttccttgttgctccaattgaaaaacaacctgatattcaactccgaaatatcttcaaagctagttcattggaagcaaagtgaacatgattgt |
5390958 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||| |
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|
| T |
5390959 |
tgccaatgggatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattcaagtgctcttt |
5391058 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttt |
287 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
5391059 |
tcagcctgcaatacttgcagagcctgaatttggcttt |
5391095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 51 - 303
Target Start/End: Complemental strand, 5426188 - 5425936
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| | ||||||| ||||||| ||||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
5426188 |
ccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaaatgatgatgattgt |
5426089 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||| |||||||||| |||| ||| || |||||||||||||||||||||||||| |||||||| || ||||||||| | | ||||||| |||||| |
|
|
| T |
5426088 |
tgccaatggaatggggtaacttgcatagaggggcatgttacagcccttgatcttagtcatgagtctatttccggaggacttaatgcttcaagttctcttt |
5425989 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttttaatgactttcgttct |
303 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
5425988 |
tcagcctgcaatatctgcagagtttgaatttagctttaaatgactttcattct |
5425936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 292
Target Start/End: Original strand, 5399189 - 5399430
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| | | ||||||| | |||||| ||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
5399189 |
ccatgaacgttctttgttgctccttttgaaaaacagtttgatattcaaccccaaaaaatcttcaaagctagttcaatggaaccaaattgatgatgattgt |
5399288 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||| |||||||||| |
|
|
| T |
5399289 |
tgccaatggaatggggtaacttgcgtagagggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaatgattctagtgctcttt |
5399388 |
T |
|
| Q |
251 |
tcagcctgcaatatctgcagagtctgaatttggcttttaatg |
292 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5399389 |
tcaacctgcaatatctgcagagtctgaatttagctttaaatg |
5399430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5390791 - 5390840
Alignment:
| Q |
1 |
ttctttataccattcagaataatcaattccagttctaataattttttggt |
50 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| |||||| |||| |
|
|
| T |
5390791 |
ttcttaataccattcagcataataaattccagttctaacaattttgtggt |
5390840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 20326724 - 20326933
Alignment:
| Q |
51 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaaatcctcaaagctatttcattggaaccaaggtgatgatgattgt |
150 |
Q |
| |
|
|||| ||||| || |||||||||| ||||| |||||| | | ||||||| | |||||| ||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
20326724 |
ccatcaacgtgccgtgttgctccaattgaagaacaacttgatattcaaccctgaaaaatcttcaaagctagttcattggaaccaaagtgaatatgattgt |
20326823 |
T |
|
| Q |
151 |
tgtcaatggcatggggtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatctcaggaggacttgacgattcaagtgctcttt |
250 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||| |
|
|
| T |
20326824 |
tgcaaatggcatggtgtaacatgcaaagatggacatgttacagcccttgatcttagtcaagagtctatttccggaggacttaacgattcaagtgccattt |
20326923 |
T |
|
| Q |
251 |
tcagcctgca |
260 |
Q |
| |
|
|||||||||| |
|
|
| T |
20326924 |
tcagcctgca |
20326933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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