View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_24 (Length: 299)
Name: NF18527_low_24
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 38831028 - 38831292
Alignment:
| Q |
18 |
gaagaaatctacgacaattccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacat |
117 |
Q |
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| T |
38831028 |
gaagaaatctacgacaattccgaatgtgcaactctgcacctatgtaatggccagttgtgtcttattattcagctatgtcatttagattcagttcccacat |
38831127 |
T |
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| Q |
118 |
cattgcttaactttcttcgactgccagattatacctttgtcagtgttggtattaaagatgatttggctaaacttaagaaggaatatgggattagatgcag |
217 |
Q |
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| T |
38831128 |
cattgcttaactttcttcgactgccagattatacctttgtcagtgttggtattaaagatgatttggctaagcttaagaaggaatatgggattagatgcag |
38831227 |
T |
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| Q |
218 |
aaatgctgtggaacttggacctcttgctgctagtgtcttgaaagtgcctcgtttggctttctgtg |
282 |
Q |
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| T |
38831228 |
aaatgctgtggaacttggacctcttgctgctagtgtcttgaaagtgcctcgtttggctttctgtg |
38831292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 253
Target Start/End: Original strand, 38820688 - 38820868
Alignment:
| Q |
73 |
cgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttcgactgccagattatacctttgtcagtgttggtattaa |
172 |
Q |
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| T |
38820688 |
cgtgtcttattattcagctatgtcatttagattcatttcccacatcattgcttaattttcttcgtcttccagattatacctttgttggtgttggtatcaa |
38820787 |
T |
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| Q |
173 |
agatgatttggctaaacttaagaaggaatatgggattagatgcagaaatgctgtggaacttggacctcttgctgctagtgt |
253 |
Q |
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| T |
38820788 |
tcataatttggctaaacttgagaaggaatatggggttagatgcagaaatgctgtggaacttggacccttggctgctagtgt |
38820868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 28159296 - 28159395
Alignment:
| Q |
37 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaactttcttcg |
136 |
Q |
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| T |
28159296 |
ccgaatatgcaactctgcatctatgtattggttattcatgtcttattattcagtcatgtcattaagattcatttcccacaacattgcttaattttcttcg |
28159395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 16081884 - 16081974
Alignment:
| Q |
37 |
ccgaatgtgcaactctgcacctatgtaatggccagccgtgtcttattattcagctgtgtcatttagattcagttcccacatcattgcttaa |
127 |
Q |
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| T |
16081884 |
ccgaatatgcaactctgcatctatgtattggttatttgtgacttattattcagttatgtcattaagattcatttcccacatcattacttaa |
16081974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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