View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_25 (Length: 297)
Name: NF18527_low_25
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 2653161 - 2653416
Alignment:
| Q |
1 |
ctcctcaagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaataacaggttcataataagagcaagaaccatatgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
2653161 |
ctcctcaagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaagaacaggttcataataagaacaagaaccatatgat |
2653260 |
T |
|
| Q |
101 |
tcatcaacaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2653261 |
tcatcaacaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacag |
2653360 |
T |
|
| Q |
201 |
attcttgagaataagatgaactaccattacaatcctcaacagaaacattatcacca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2653361 |
attcttgagaataagatgaactaccattacaatcctcaacagacacattatcacca |
2653416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Original strand, 2653442 - 2653471
Alignment:
| Q |
258 |
attcatctttcactgatcttttcttctgtg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2653442 |
attcatctttcactgatcttttcttctgtg |
2653471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University