View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_29 (Length: 258)
Name: NF18527_low_29
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8938180 - 8937945
Alignment:
| Q |
1 |
gttggagaaaataatgtacatacgtcatctaaagtgaaaaaataaggggaccgaagaaaattcaaaatagaaccattcaacccctttattctatactagc |
100 |
Q |
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| T |
8938180 |
gttggagaaaataatatacatacgtcatctaaagtgaaaaaataaggggaccgaagaaaattcaaaatagaaccattcaacccctttattctatactagc |
8938081 |
T |
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| Q |
101 |
agaaaagaaagacaaccactcaactaccttactactatttttatttcactnnnnnnnnnttccacagattttcattcaaattattagattataacgatac |
200 |
Q |
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| T |
8938080 |
agaaaagaaagacaaccactcaactaccttactactatttttatttcactaaaaaaaaattccacagattttcattcaaattattagagtataacgatac |
8937981 |
T |
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| Q |
201 |
aatacaactatgcctataaactaatatcatccatatcaatag |
242 |
Q |
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| T |
8937980 |
------actatgcctataaactaatatcatccatgtcaatag |
8937945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 8925727 - 8925637
Alignment:
| Q |
22 |
acgtcatctaaagtgaaaaaataaggggaccgaagaaaattcaaaatagaaccattcaacccctttattctatactagcagaaaagaaaga |
112 |
Q |
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| T |
8925727 |
acgtcatctaaaggaaaaaaataaggagaccgaagaaaattcaaaatagaaccattcaacccttttattctatactagcagaaaagaaaga |
8925637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8961112 - 8961031
Alignment:
| Q |
1 |
gttggagaaaataatgtacat----acgtcatctaaagtgaaaaaat-aaggggaccgaagaaaattcaaaatagaaccatt |
77 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |
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| T |
8961112 |
gttgaagaaaataatgtacatcacaacgtcatctaaaggaaaaaaaacaaggagaccgaagaaaattcaaaatagaaccatt |
8961031 |
T |
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