View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_33 (Length: 242)
Name: NF18527_low_33
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 33250329 - 33250544
Alignment:
| Q |
17 |
accaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250329 |
accaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattgg |
33250428 |
T |
|
| Q |
117 |
cacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaacnnnnnnncaccacaaaagaaacaacctcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33250429 |
cacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaacaaaaaaacaccacaaaagaaacaacctcct |
33250528 |
T |
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| Q |
217 |
acaacttcatcctttg |
232 |
Q |
| |
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|| |||||||| |||| |
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| T |
33250529 |
actacttcatcgtttg |
33250544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 33264482 - 33264636
Alignment:
| Q |
78 |
caaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaa |
177 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
33264482 |
caaatattctatggcccttgttgtgactcttcccattggaacaccaccacagcttcaacaaatggttttggatacaggaagccaagtttcatggattcac |
33264581 |
T |
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| Q |
178 |
tgtcacaacnnnnnnncaccacaaaagaaacaacctcctacaacttcatcctttg |
232 |
Q |
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| T |
33264582 |
tgtgacaacaaaaaaggaccacaaaagaaacaacctcctacgacttcatcgtttg |
33264636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 50236825 - 50237036
Alignment:
| Q |
17 |
accaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattgg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50236825 |
accaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatcatctttcaaatattctatggctcttgttctgactcttcccattgg |
50236924 |
T |
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| Q |
117 |
cacaccaccacagcttcaacaaat-ggttttagacacaggaagccaactttcatggattcaatgtcacaacnnnnnnncaccacaaaagaaacaacctcc |
215 |
Q |
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|||||||||||| ||||||||||| ||| || || |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
50236925 |
cacaccaccacaacttcaacaaatgggtattggatacaggaagccaaatttcatggattcagtgtcacaacaaaaaagcaccgcaaaagaaacaacctcc |
50237024 |
T |
|
| Q |
216 |
tacaacttcatc |
227 |
Q |
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|||||||||||| |
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| T |
50237025 |
tacaacttcatc |
50237036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 29395166 - 29395242
Alignment:
| Q |
109 |
cccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaa |
185 |
Q |
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|||||||| |||||||| || ||||| |||||| || ||||| || |||||||||||||||||||| |||||||| |
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| T |
29395166 |
cccattggaacaccacctcaaactcaaccaatggtgttggacactggtagccaactttcatggattcagtgtcacaa |
29395242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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