View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_35 (Length: 238)
Name: NF18527_low_35
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49779187 - 49778966
Alignment:
| Q |
1 |
aagactagaatgaaaaagattgcaataagtaaacaaaatttagacaattctagtgtaagttaaaatagcttctgtatctcagctttttacaagctctctc |
100 |
Q |
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| T |
49779187 |
aagactagaatgaaaaagattgcaataagtaaacaaaatttagacaattctagtgtaagttaaaatagcttctgtatctcagctttttacaagctctctc |
49779088 |
T |
|
| Q |
101 |
atataacttctaaaactttaaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatctagggatggccttcagctatgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49779087 |
atataacttctaaaactttaaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatctagggatggccttcaactatgaaa |
49778988 |
T |
|
| Q |
201 |
acagctaaacgtaggagttaca |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
49778987 |
acagctaaacgtaggagttaca |
49778966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 7990142 - 7990346
Alignment:
| Q |
19 |
attgcaataagtaaacaaaatttagacaattctagtgtaagttaaaatagcttctgtatctcagctttttacaagctctctcatataacttctaaaactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||| |
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| T |
7990142 |
attgcaataagtaaacaaaatttagacaattctagtgtaagttaaaatagcttctgtatctcagctttttagaagctttctcgtataacttctacaactt |
7990241 |
T |
|
| Q |
119 |
taaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatctagggatggccttcagctatgaaaacagctaaacgtaggagt |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||| || |
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| T |
7990242 |
taaaaggactttgaagaaccataaaattgttctgaataataagctctcaaaactaatctagagatggccttcaactatgaaaacagctaaatgtaggggt |
7990341 |
T |
|
| Q |
219 |
tacat |
223 |
Q |
| |
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||||| |
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| T |
7990342 |
tacat |
7990346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 31603205 - 31603131
Alignment:
| Q |
104 |
taacttctaaaactttaaaaggactttgaagaagcataaaattgttctgaataataagctctcgaaactaatcta |
178 |
Q |
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||||||||| ||||| | || |||||||||||| |||||| ||||| |||| | ||||||| |||||||||||| |
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| T |
31603205 |
taacttctacaacttcataacgactttgaagaatcataaacttgtttggaatgagaagctctagaaactaatcta |
31603131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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