View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_4 (Length: 532)
Name: NF18527_low_4
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 26644142 - 26644302
Alignment:
| Q |
57 |
gttgagctgacataaactcattggggggagaaatgtattttcgcacagtaaatatttttgttgaggcatacattaacaaacttcggtagtatccacatgt |
156 |
Q |
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| T |
26644142 |
gttgagctgacataaactcattggggggagaaatgtatgttcgcacagtaaatatttt-gttgaggcatacattaacaaacttcggtcgtatccacatgt |
26644240 |
T |
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| Q |
157 |
atcagataatcctacaacatccatatcacaacatgatgcatatgtattaccccacgcgggtt |
218 |
Q |
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| T |
26644241 |
atcagatcatcctacaacatccatataacaacatgatgcatatgtattaccccacgcgggtt |
26644302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 380 - 508
Target Start/End: Original strand, 26645263 - 26645391
Alignment:
| Q |
380 |
aagatttctgacttcgccaccttttcgggggaagatggaaaatcaactatcgagcatattggaaggttgactatgcaatgcggtgagtaataacatttat |
479 |
Q |
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| T |
26645263 |
aagattcctgacttcgtcaccttttcgggggaagatggaaaatcaactatcgagcatattggaaggttgactatgcaatgcggtgagtaataacatttat |
26645362 |
T |
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| Q |
480 |
gtggtattcctctctctctcactaaactc |
508 |
Q |
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| T |
26645363 |
gtgatattcctctctctctcactaaactc |
26645391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 15919122 - 15919082
Alignment:
| Q |
404 |
tcgggggaagatggaaaatcaactatcgagcatattggaag |
444 |
Q |
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| T |
15919122 |
tcgggggaagatggaaaatcaactatttagcttattggaag |
15919082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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