View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_40 (Length: 232)
Name: NF18527_low_40
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 51662063 - 51661840
Alignment:
| Q |
18 |
gtttctccgtcaagtattgtggtttgtgagataaaggtcggatg--atgcccggacctaaatgacgttctccggcattgatggtgnnnnnnngcttgtac |
115 |
Q |
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| T |
51662063 |
gtttctccgtcaagtatcgtggtttgtgagataaaggtcggatgatatgcccggacctaaatgacgttctccggcattgatggtgtttttttgcttgtac |
51661964 |
T |
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| Q |
116 |
ttggtggatctaaaatttaaatggccatggtgtgg----------------aggtggatttggtgttttgttaaagtcataatgagagattgacaacaaa |
199 |
Q |
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| T |
51661963 |
tgggtggatctaaaatttaaatggccatggtgtggttgaacagaaggtttatggtggatttggtgttttgttaaagtcataatgagagattgacaacaaa |
51661864 |
T |
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| Q |
200 |
tttgaagttgagtggttgatgatg |
223 |
Q |
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| T |
51661863 |
tttgaagttgagtggttgttgatg |
51661840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 44976488 - 44976356
Alignment:
| Q |
18 |
gtttctccgtcaagtattgtggtttgtgagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgatggtgnnnnnnngcttgtactt |
117 |
Q |
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| T |
44976488 |
gtttctccgtcaagtatcgtggtttgtaagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgaaggtgtttttttgcttgtactt |
44976389 |
T |
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| Q |
118 |
ggtggatctaaaatttaaatggccatggtgtgg |
150 |
Q |
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| T |
44976388 |
ggtggatctaaaatttaaatggccatggtgtgg |
44976356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 44976327 - 44976255
Alignment:
| Q |
151 |
aggtggatttggtgttttgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgatgatg |
223 |
Q |
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| T |
44976327 |
aggtggatttagtgttttgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgttgatg |
44976255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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