View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_41 (Length: 224)
Name: NF18527_low_41
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_41 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49779498 - 49779276
Alignment:
| Q |
1 |
taggattggataaatgccacttgatgaggactagactcacttcatgatcatgttctgtcttaatcctaaaatacagtcagataatcatgctgccaaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49779498 |
taggattggataaatgccacttgatgaggactagactcacttcatgatcatgttctgtcttaatcctaaaatacagtcagataatcatgctgccaaatta |
49779399 |
T |
|
| Q |
101 |
aagttccctgcttaaagatcaaataaaatttatctacaatttagattataaatcaaatttattgtaaatttatctgtaaaaatgttttctcttctaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49779398 |
aagttccctgcttaaagatcaaataaaatttatctacaatttagattataaatcaaatttattgtaaatttatctgt-aaaatgttttctcttctaaaca |
49779300 |
T |
|
| Q |
201 |
ctgcttaacaaacaacaattagaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49779299 |
ctgcttaacaaacaacaattagaa |
49779276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 7989817 - 7990030
Alignment:
| Q |
7 |
tggataaatgccacttgatgaggactagactcacttcatgatcatgttctgtcttaatcctaaaatacagtcagataatcatgctgccaaattaaagttc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
7989817 |
tggataaatgccacttgatgaggactagacgcacttcatgatcatcttctgctttaatc-taatgtacagttagataatcatgctgccaaaataaagttt |
7989915 |
T |
|
| Q |
107 |
cctgcttaaagatcaaataaaatttatctacaatttagattataaatcaaatttattgtaaatttatctgtaaaaatgttttctcttctaaacactgctt |
206 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
7989916 |
cctactttaagatcaaataaaatttatctacaatttagattataaatcaaattcattgtaaatttatcagtaaaaatgttttttcttctaaacactgttt |
7990015 |
T |
|
| Q |
207 |
aacaaacaacaatta |
221 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
7990016 |
agaaaacaacaatta |
7990030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University