View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_43 (Length: 219)
Name: NF18527_low_43
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 27961644 - 27961733
Alignment:
| Q |
118 |
aatattgatatt-caatcatccatgatttgatatgtatgagcatataaaatcaactgtcaatttgtttatcaaccattgatattgttttt |
206 |
Q |
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| T |
27961644 |
aatattgatatttcaatcatccatgatttgatatgtatgagcatataaaatcaactgtcaatttgtttatcaaccattgatattgttttt |
27961733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 27961501 - 27961620
Alignment:
| Q |
11 |
catcatcaccctgtttcgtttggtattaaaccatcatcagatcattat-----------caaaccaataaaagaatagacacattaaaatgcaggattta |
99 |
Q |
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| T |
27961501 |
catcttcaccctgtttcgtttggtattaaaacattaccagatcattatgattaacatatcaaaccaataaaagaatagctacattaaaatgcaggatttg |
27961600 |
T |
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| Q |
100 |
actccttcgtctgaagtgaa |
119 |
Q |
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| T |
27961601 |
actcctccatctgaagtgaa |
27961620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 16330654 - 16330567
Alignment:
| Q |
118 |
aatattgatatt-caatcatccatgatttgatatgtatgagcatataaaatcaactgtcaatttgtttatcaaccattgatattgttt |
204 |
Q |
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| T |
16330654 |
aatattgatatttcaatcatccatgatttgatatgcatgagcatacaaaatcaactgtcaatttgtttatcaaccattgatattgttt |
16330567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 16330740 - 16330676
Alignment:
| Q |
57 |
atcaaaccaataaaagaatagacacattaaaatgcaggatttaactccttcgtctgaagtgaata |
121 |
Q |
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| T |
16330740 |
atcaaaccaataaaataatagacacattaaaatgcaggatttaactcctttatctgaagtgaata |
16330676 |
T |
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