View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_44 (Length: 210)
Name: NF18527_low_44
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 39315174 - 39315353
Alignment:
| Q |
19 |
agcaagccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaaga |
118 |
Q |
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| T |
39315174 |
agcaagccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaaga |
39315273 |
T |
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| Q |
119 |
gcaccagtgaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgata |
198 |
Q |
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| T |
39315274 |
gcaccagtgaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgata |
39315353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 39306184 - 39306352
Alignment:
| Q |
21 |
caagccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaagagc |
120 |
Q |
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| T |
39306184 |
caagccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggttgggtcacaatgaggaccagtgccaagggc |
39306283 |
T |
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| Q |
121 |
accagtgaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaa |
189 |
Q |
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| T |
39306284 |
acctgcatggatgccactgcaaggtgggtaagagttgcacctcatcatagtttctgcatcttcaaaaaa |
39306352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 40553881 - 40553797
Alignment:
| Q |
24 |
gccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggcc |
108 |
Q |
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| T |
40553881 |
gccacttgttgtcaacaaaaacttgaagacctccaacttgatcttgatgaagtagtgttattgaggttggatcacaatgagggcc |
40553797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 44113925 - 44114095
Alignment:
| Q |
25 |
ccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaagagcacca |
124 |
Q |
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| T |
44113925 |
ccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagtaccaagtg----- |
44114019 |
T |
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| Q |
125 |
gtgaggttagcactg---caaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaatctttgata |
198 |
Q |
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| T |
44114020 |
-tgagattagaacttttacaaggtggataatagttacatctcattattgagtcaccatcttcaaaaaatcttcgata |
44114095 |
T |
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