View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18527_low_5 (Length: 530)
Name: NF18527_low_5
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 206 - 392
Target Start/End: Original strand, 43163259 - 43163445
Alignment:
| Q |
206 |
gattgcaaacttgaggtcttttagttatgaaattgcatgcttacatttctttattatcctgttcgattttctgttgaaggcattgatagattatatctta |
305 |
Q |
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| T |
43163259 |
gattgcaaacttgaggtcttttagttatgaaattgcatgcttacatttctttattatcctgttcgattttctgtcgaaggcattgatagattatatctta |
43163358 |
T |
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| Q |
306 |
tgtacaatttaaaatttgagtatattgtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaaaaccaaggtat |
392 |
Q |
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| T |
43163359 |
tgtacaatttagaatttgagtatattgtgtatatcgtgaaaattgatgattgcgattatatttacaggtctgggaaaaccaaggtat |
43163445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 43163444 - 43163535
Alignment:
| Q |
430 |
atccacatgattagatttggtaatcttgg-ttctttctttataacaaaacagaaaggttccatattttgttttcactgctgcattttgatga |
520 |
Q |
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| T |
43163444 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttaactggtgcattttgatga |
43163535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 51463914 - 51464201
Alignment:
| Q |
17 |
atgtatgaaatcttgatcataaa-cctatttcagttctgcgttcctgttttatgccatcatgtcaagaatttcttattgggattttatgtactg-ttttt |
114 |
Q |
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| T |
51463914 |
atgtatgaaatcttggtcatcaagcctatttcagttctatgttcccgtgttctgtcatcatgtcaacaatttcttattgggattttatctactgtttttt |
51464013 |
T |
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| Q |
115 |
tcctgatgactgcttcttggtaccaggtgaagaaaattgtcatgcatgc--tgcttgatgtgattgaaaaattagagaaagcaaggttagtgtgattgca |
212 |
Q |
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| T |
51464014 |
tactgatgactgcttcttggtaccaggtgaagaaaattgccgtacatgctatgcttgatgtggttgaaaaattagagaaagcaaggtta--gtgattgca |
51464111 |
T |
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| Q |
213 |
aacttgag--gtcttttagttatgaaattgcatgcttacatttctttattatcctgttcgattttctgttgaaggcattgatagattata |
300 |
Q |
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| T |
51464112 |
aacttcaggcgtttttttgttatggaattgtatacttacatttctttattaaactgttccctttgttgtcaaaggcattgatagattata |
51464201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 434
Target Start/End: Original strand, 51464267 - 51464367
Alignment:
| Q |
331 |
tgtgtatatcgtgaaaattgatgattgctattaaatttacaggtctgtgaaaaccaaggtatgcgcgt-aatataccagagggagagagaaagagattga |
429 |
Q |
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| T |
51464267 |
tgtgtatatcatgaaaattgatgattgccattaaatttacaggtctgggaaaaccaaggtttgtgcgtaaatataccagagg----gagaaagagattga |
51464362 |
T |
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| Q |
430 |
atcca |
434 |
Q |
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| T |
51464363 |
atcca |
51464367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 51464397 - 51464452
Alignment:
| Q |
437 |
tgattagatttggtaatcttggttctttctttataacaaaacagaaaggttccatattt |
495 |
Q |
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| T |
51464397 |
tgattaggtttggtaatcttgggt---tctttataacaaaacagaaaggttccatattt |
51464452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 51463833 - 51463875
Alignment:
| Q |
89 |
ttattgggattttatgtactgttttttcctgatgactgcttct |
131 |
Q |
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| T |
51463833 |
ttattgggattttatgcactgttttttcctgatgtctgcttct |
51463875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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