View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_8 (Length: 411)
Name: NF18527_low_8
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_8 |
 | |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 166 - 393
Target Start/End: Complemental strand, 15156938 - 15156710
Alignment:
| Q |
166 |
aattatattgtgtgcagttattttcta-gaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggtt |
264 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
15156938 |
aattatattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggtt |
15156839 |
T |
|
| Q |
265 |
cattagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgat |
364 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15156838 |
cattaggaaaggagagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgataacacaacatggcgat |
15156739 |
T |
|
| Q |
365 |
ttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
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|
| T |
15156738 |
ttctacaaagtcagctcccttgaagccat |
15156710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 20513289 - 20513346
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
20513289 |
caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccat |
20513346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 166 - 391
Target Start/End: Original strand, 25555600 - 25555817
Alignment:
| Q |
166 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
265 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
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| T |
25555600 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
25555691 |
T |
|
| Q |
266 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt |
365 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25555692 |
attaggaaaggagagacacaaggatcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt |
25555791 |
T |
|
| Q |
366 |
tctacaaaatcagctcccttgaagcc |
391 |
Q |
| |
|
|||||||| ||||||| ||||||||| |
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|
| T |
25555792 |
tctacaaagtcagctctcttgaagcc |
25555817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 1243 - 1186
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1243 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
1186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 14674730 - 14674787
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14674730 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
14674787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 25549303 - 25549376
Alignment:
| Q |
166 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaata |
239 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
25549303 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata |
25549376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 20133386 - 20133329
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20133386 |
caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccat |
20133329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 166 - 391
Target Start/End: Complemental strand, 20011229 - 20011012
Alignment:
| Q |
166 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
265 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
|
|
| T |
20011229 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
20011138 |
T |
|
| Q |
266 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt |
365 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
20011137 |
attaggaaaggaaagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt |
20011038 |
T |
|
| Q |
366 |
tctacaaaatcagctcccttgaagcc |
391 |
Q |
| |
|
|||||||| ||||||| ||||||||| |
|
|
| T |
20011037 |
tctacaaagtcagctctcttgaagcc |
20011012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 33483373 - 33483316
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33483373 |
caggctgtacgataacacaacatggcgatttctacaaaattagctcccttgaagccat |
33483316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 166 - 391
Target Start/End: Complemental strand, 22621342 - 22621125
Alignment:
| Q |
166 |
aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc |
265 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| || |
|
|
| T |
22621342 |
aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc |
22621251 |
T |
|
| Q |
266 |
attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt |
365 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||| || |
|
|
| T |
22621250 |
attaggaaaggagagacacaaggttcttgaaaccttgtgagtatgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacagcatggcggtt |
22621151 |
T |
|
| Q |
366 |
tctacaaaatcagctcccttgaagcc |
391 |
Q |
| |
|
|||||||| ||||||| ||||||||| |
|
|
| T |
22621150 |
tctacaaagtcagctctcttgaagcc |
22621125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 19808513 - 19808677
Alignment:
| Q |
171 |
tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttcattag |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19808513 |
tattgtgtgcagttattttctagaatgtg--tattctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttcattgg |
19808610 |
T |
|
| Q |
271 |
aaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttca |
337 |
Q |
| |
|
|||||||||||||||||||| | | |||||||| |||||||||||| ||||||| ||||| |||||| |
|
|
| T |
19808611 |
aaaaggagagacacaaggctctcggaaccttgtgagtgtgtactgtgaatatttctgtgtaatttca |
19808677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 19808795 - 19808684
Alignment:
| Q |
30 |
tgatagaaactgataccaataggataaatgactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat |
129 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19808795 |
tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat |
19808696 |
T |
|
| Q |
130 |
cacagacttgta |
141 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19808695 |
cacacacttgta |
19808684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 44358685 - 44358742
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44358685 |
caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccat |
44358742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 48009 - 48066
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48009 |
caggcggtacggtaacacaacatggcgatttctacaaaatcagctcccttgaagccat |
48066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 134952 - 134895
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
134952 |
caggcggtacaataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
134895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 23695014 - 23695071
Alignment:
| Q |
336 |
caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccat |
393 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23695014 |
caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccat |
23695071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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