View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18527_low_9 (Length: 408)
Name: NF18527_low_9
Description: NF18527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18527_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 43394981 - 43394585
Alignment:
| Q |
1 |
tgcattaaatctatgttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattgatagaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43394981 |
tgcattaaatctatgttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattaatagaatt |
43394882 |
T |
|
| Q |
101 |
gttggtgtttt-gtgtgaaaatgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaat |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43394881 |
gttggtgtttttgtgtgaaaatgcagatgcaggaagagctttcaacaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaat |
43394782 |
T |
|
| Q |
200 |
tggctaggcaagctgggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatatat----atatgcatttaatgaaggcatgcaaaatgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43394781 |
tggctaggcaagctgggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatatatatgcatttaatgaaggcatgcaaaatgt |
43394682 |
T |
|
| Q |
296 |
aattggtgatttttgtaactacgaaggnnnnnnnnnnnntgttaagtattcaccactagaattggaaaggcaatatggcctgtttgagagcattgtg |
392 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43394681 |
aattggtgatttttgtaactacgaaggaaaaaagaaaaatgttaagtattcaccactagaattggaaaggcaatatggcctgtttgagagcattgtg |
43394585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 120 - 314
Target Start/End: Complemental strand, 43406987 - 43406795
Alignment:
| Q |
120 |
atgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaattggctaggcaagctgggcca |
219 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
43406987 |
atgcagatgtaggaagagctttcaacaaatgaagagagagtatgcagcattgagaaagagacttgaaacttattttcagctggctaggcaagctggtcca |
43406888 |
T |
|
| Q |
220 |
atggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatatgcatttaatgaaggcatgcaaaatgtaattggtgatttttgtaac |
314 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | | | ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
43406887 |
ttggatagagcatgtcgccctaagtaaacacctt--atagagatatatatgaatttaatgaagccatgcaaaatgtaattggtgaattttgtaac |
43406795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 43406771 - 43406729
Alignment:
| Q |
339 |
aagtattcaccactagaattggaaaggcaatatggcctgtttg |
381 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
43406771 |
aagtattcaccactagaattggaaaggaaaaattgcctgtttg |
43406729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University