View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18528_high_11 (Length: 252)

Name: NF18528_high_11
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18528_high_11
NF18528_high_11
[»] chr5 (17 HSPs)
chr5 (16-252)||(9288589-9288825)
chr5 (15-252)||(9373202-9373439)
chr5 (25-252)||(9352087-9352332)
chr5 (112-252)||(9293118-9293274)
chr5 (188-252)||(9305558-9305622)
chr5 (25-252)||(9367285-9367533)
chr5 (16-78)||(9293284-9293346)
chr5 (182-252)||(9297725-9297795)
chr5 (25-179)||(9302029-9302187)
chr5 (31-181)||(9356073-9356227)
chr5 (25-140)||(9309661-9309780)
chr5 (182-252)||(9332359-9332429)
chr5 (111-183)||(9297813-9297883)
chr5 (212-252)||(9301940-9301980)
chr5 (15-75)||(9305755-9305815)
chr5 (28-78)||(9297891-9297941)
chr5 (25-183)||(9332445-9332608)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 9288825 - 9288589
Alignment:
Q  16 aatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaatatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9288825 aatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaatatc 9288726  T
Q  116 atgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaataacaaacaacaaattaaagagaaatatgg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9288725 atgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaagaacaaacaacaaattaaagagaaatatgg 9288626  T
Q  216 caagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9288625 caagcaacaattaccatgttcgctcaaacagttttcc 9288589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 9373202 - 9373439
Alignment:
Q  15 aaatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaatat 114  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||  ||||||||||| ||||  ||  ||||||||| | ||||||||||||||||||    
T  9373202 aaattcatgtaggcaccacatgctctactccatcattaacaactgccctctattttattcatttcctttctatatgaacttgataattatcaaccaatat 9373301  T
Q  115 catgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaaaataacaaacaacaaattaaagagaaatatg 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9373302 catgattagctcttatataaagagagagtctagcacttggtaatatcaaacaaacatcgagctttacaaaataacaaacaacagattaaagagaaatatg 9373401  T
Q  215 gcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  9373402 gcaagcaacaagtaccatgttcgctcaaacagttttcc 9373439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 9352332 - 9352087
Alignment:
Q  25 aggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaat----atcatgat 120  Q
    ||||||||||||||||||||||||  |||||| |||||| ||||||||||||||  |||| |||||||  ||||||||||||||||||    || | ||     
T  9352332 aggcaccacatgctctacaccatcactaacaagtgctgtttattttattaatttcattatcatatgaatttaataattatcaaccaatcaatatgacgaa 9352233  T
Q  121 tagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttac--------------aaaataacaaacaacaaattaaaga 206  Q
    || |||||||||||| ||||| ||||| ||||||||| ||||  ||||||| |||||||||              ||||||||| |||||||||||||||    
T  9352232 tacctcttatataaatagagattcaagaacttggtaacatcacacaaacattgagctttacaatcttagaaaagaaaaataacacacaacaaattaaaga 9352133  T
Q  207 gaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
     ||||||||||| || ||| || || ||||||||||||||||||||    
T  9352132 caaatatggcaaacaccaagtatcatgttcgctcaaacagttttcc 9352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 9293274 - 9293118
Alignment:
Q  112 tatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa----------------aataacaaacaa 195  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||| ||||  |||||||  ||||||||||                ||||||||||||    
T  9293274 tatcatgattagctcatatataaatagagagtcaagaacttggtaacatcacacaaacattaagctttacaattatcttagaagaaaaaataacaaacaa 9293175  T
Q  196 caaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9293174 caaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 9293118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 9305622 - 9305558
Alignment:
Q  188 acaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9305622 acaaacaacaaattaaagagaaatatggcaagcaacaattaccatgttcgctcaaacagttttcc 9305558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 9367285 - 9367533
Alignment:
Q  25 aggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaat----atcatgat 120  Q
    ||||||||||||||||||||||||    |||| ||||   ||||||||||||||  |||| |||||||  |||||||| |||||||||    || ||||     
T  9367285 aggcaccacatgctctacaccatcaccgacaagtgcttcatattttattaatttcattatcatatgaatttaataattctcaaccaatcaatatgatgaa 9367384  T
Q  121 tagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa-----------------aataacaaacaacaaattaa 203  Q
    || |||||||||||| ||||||||||| ||||||||| ||||  ||||| | |||||||| ||                 || ||||||| | || ||||    
T  9367385 tacctcttatataaatagagagtcaagaacttggtaacatcacacaaacttagagctttataattatcttagaagaaaaaaagaacaaactataatttaa 9367484  T
Q  204 agagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9367485 agagaaatatggcaagcaacaattaccatgttcgctcaaacagttttcc 9367533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 9293346 - 9293284
Alignment:
Q  16 aatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaattt 78  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9293346 aattcatgtaggcaccacatgctctacaccatcattaacaactgctgtctattttattaattt 9293284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 9297795 - 9297725
Alignment:
Q  182 aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  9297795 aaaataacaaactacaatttaaagagaaatatggcaagcaacaagtaccatgttcgctcaaacagttttcc 9297725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 9302187 - 9302029
Alignment:
Q  25 aggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaac----caatatcatgat 120  Q
    ||||||||||||||||||||||||  |||||| |||||  ||||||||||||||  ||||||||| ||  ||| ||||||||||    |||||| ||||     
T  9302187 aggcaccacatgctctacaccatcactaacaagtgctgcatattttattaatttcattattatatcaatttaacaattatcaaccaatcaatatgatgaa 9302088  T
Q  121 tagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagcttt 179  Q
    || |||||||||||| || |||||||| ||||||||| ||||  ||||| || ||||||    
T  9302087 tacctcttatataaatagggagtcaagaacttggtaacatcacacaaacttctagcttt 9302029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 9356073 - 9356227
Alignment:
Q  31 cacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaatatca----tgattagctc 126  Q
    ||||||||||| |||||  ||||||| || |  ||||||||| |||||  ||||||||||||  ||||||| | ||||||||||||    ||| | ||||    
T  9356073 cacatgctctaaaccatgattaacaagtgatacctattttatcaatttccttattatatgaaattaataatcagcaaccaatatcaatcatgaatggctc 9356172  T
Q  127 ttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttac 181  Q
    ||||||||||||||||||| ||||||||||| | ||  ||||||| |||||||||    
T  9356173 ttatataaagagagagtcaggcacttggtaacaccacacaaacattgagctttac 9356227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 9309661 - 9309780
Alignment:
Q  25 aggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgttattatatgaacataataattatcaaccaat----atcatgat 120  Q
    ||||||||||||||||| |||||  ||||||| || |  |||||||||||||||  ||||||||||||  ||||||| | ||||||||    |||||||     
T  9309661 aggcaccacatgctctaaaccatgattaacaagtgataactattttattaatttacttattatatgaaattaataatcagcaaccaatatcgatcatgaa 9309760  T
Q  121 tagctcttatataaagagag 140  Q
    | ||||||||||||||||||    
T  9309761 tggctcttatataaagagag 9309780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 9332429 - 9332359
Alignment:
Q  182 aaaataacaaacaacaaattaaagagaaatatggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    ||||||||| ||| ||||||||||| ||||||||||| || ||| || || ||||||||||||||||||||    
T  9332429 aaaataacacacagcaaattaaagaaaaatatggcaaacaccaagtatcatgttcgctcaaacagttttcc 9332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 9297883 - 9297813
Alignment:
Q  111 atatcatgattagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa 183  Q
    ||||||||||||||| ||||||||||||||  ||||||||||| ||| ||||  ||||||| |||||||||||    
T  9297883 atatcatgattagctgttatataaagagag--tcaagcacttgttaacatcacacaaacattgagctttacaa 9297813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9301980 - 9301940
Alignment:
Q  212 atggcaagcaacaattaccacgttcgctcaaacagttttcc 252  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  9301980 atggcaagcaacaattaccatgttcgctcaaacagttttcc 9301940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 9305815 - 9305755
Alignment:
Q  15 aaatttatgtaggcaccacatgctctacaccatccttaacaactgctgtctattttattaa 75  Q
    ||||| |||||||| |||||||||||||||||||  |||||| |||||| |||||||||||    
T  9305815 aaattcatgtaggccccacatgctctacaccatcactaacaagtgctgtatattttattaa 9305755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 9297941 - 9297891
Alignment:
Q  28 caccacatgctctacaccatccttaacaactgctgtctattttattaattt 78  Q
    |||||||||||| ||||||||||||||||||||||  ||||||||| ||||    
T  9297941 caccacatgctcaacaccatccttaacaactgctgcatattttattcattt 9297891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 9332608 - 9332445
Alignment:
Q  25 aggcaccacatgctctacaccatccttaacaactgctgtctattttattaattttgt-tattatatgaacataataattatcaaccaat----atcatga 119  Q
    ||||||||||||||||| |||||| | ||||| | |||  |||||||| || ||  | |||||||||||   |||||||||||||||||    || | ||    
T  9332608 aggcaccacatgctctaaaccatcatcaacaagtactgcatattttatcaacttattatattatatgaattaaataattatcaaccaatcaatatgacga 9332509  T
Q  120 ttagctcttatataaagagagagtcaagcacttggtaatatcaagcaaacatcgagctttacaa 183  Q
     || |||||||||||| ||||  ||||| ||||||||| ||||  ||||||| |||||||||||    
T  9332508 atacctcttatataaatagagcatcaagaacttggtaacatcacacaaacattgagctttacaa 9332445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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