View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18528_high_7 (Length: 313)

Name: NF18528_high_7
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18528_high_7
NF18528_high_7
[»] chr6 (5 HSPs)
chr6 (1-281)||(28138008-28138289)
chr6 (72-250)||(12938681-12938860)
chr6 (87-250)||(33694835-33694998)
chr6 (71-114)||(12466438-12466481)
chr6 (127-201)||(14532057-14532131)
[»] chr4 (10 HSPs)
chr4 (71-303)||(42976369-42976602)
chr4 (72-250)||(27292985-27293164)
chr4 (78-250)||(4919059-4919232)
chr4 (173-262)||(20133410-20133499)
chr4 (173-271)||(55919365-55919463)
chr4 (173-271)||(28679508-28679606)
chr4 (180-253)||(45989606-45989679)
chr4 (180-253)||(42069042-42069115)
chr4 (180-253)||(47031455-47031528)
chr4 (173-226)||(15531234-15531287)
[»] chr3 (12 HSPs)
chr3 (71-281)||(31658787-31658998)
chr3 (72-250)||(50650391-50650570)
chr3 (87-271)||(12938455-12938640)
chr3 (173-274)||(5232946-5233047)
chr3 (173-274)||(20104322-20104423)
chr3 (173-262)||(39833218-39833307)
chr3 (87-201)||(29833329-29833444)
chr3 (72-247)||(33216657-33216833)
chr3 (173-244)||(36950163-36950234)
chr3 (173-226)||(29703559-29703612)
chr3 (173-226)||(53282294-53282347)
chr3 (6-67)||(4293032-4293095)
[»] chr5 (7 HSPs)
chr5 (72-250)||(30624903-30625082)
chr5 (87-250)||(41413442-41413606)
chr5 (87-271)||(1828466-1828651)
chr5 (87-271)||(40313931-40314116)
chr5 (72-247)||(31482071-31482247)
chr5 (173-271)||(24788302-24788400)
chr5 (173-226)||(39884696-39884749)
[»] chr1 (6 HSPs)
chr1 (72-250)||(27286203-27286382)
chr1 (72-250)||(52385813-52385992)
chr1 (88-270)||(39241614-39241793)
chr1 (173-271)||(12981521-12981619)
chr1 (173-271)||(45348246-45348344)
chr1 (180-249)||(45325635-45325704)
[»] chr2 (11 HSPs)
chr2 (72-250)||(14096295-14096474)
chr2 (160-281)||(18977078-18977200)
chr2 (173-274)||(37078947-37079048)
chr2 (173-271)||(15330735-15330833)
chr2 (173-271)||(37261675-37261773)
chr2 (173-271)||(14810093-14810191)
chr2 (173-271)||(16429864-16429962)
chr2 (173-271)||(17690604-17690702)
chr2 (173-244)||(33755075-33755146)
chr2 (173-226)||(7089225-7089278)
chr2 (72-122)||(18977214-18977264)
[»] chr7 (8 HSPs)
chr7 (72-250)||(19436711-19436890)
chr7 (72-246)||(29833948-29834123)
chr7 (173-274)||(47327942-47328043)
chr7 (86-207)||(29258440-29258562)
chr7 (173-271)||(45972423-45972521)
chr7 (173-257)||(29243380-29243462)
chr7 (180-253)||(6442633-6442706)
chr7 (184-253)||(34094118-34094187)
[»] chr8 (6 HSPs)
chr8 (87-247)||(13802682-13802843)
chr8 (173-271)||(531684-531782)
chr8 (173-257)||(30945445-30945527)
chr8 (123-253)||(23613574-23613705)
chr8 (173-244)||(3879472-3879543)
chr8 (126-247)||(23614215-23614338)
[»] scaffold0166 (1 HSPs)
scaffold0166 (173-271)||(30685-30783)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 28138289 - 28138008
Alignment:
Q  1 aatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaag-tacagtcgtttaattcagccaatcaaatttc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28138289 aatactgtaatagggtgcagacccactcctgccgattttaatgcatttcttagcctttatcaaaaaaggtacagtcgtttaattcagccaatcaaatttc 28138190  T
Q  100 aagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28138189 aagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatcttaaaggttagat 28138090  T
Q  200 ttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctccttttatttccc 281  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138089 ttacttggtctctatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctccttttatttccc 28138008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 12938681 - 12938860
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||| ||||||| |||| |||  |||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  12938681 agtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagaca 12938780  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  12938781 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 12938860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 33694835 - 33694998
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 186  Q
    ||||||| |||| |||| ||||||||| ||||   ||| ||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||||||    
T  33694835 ccaatcagattttaagtgatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatc 33694934  T
Q  187 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||  |||||||||| |||| || ||||||||||||||||  | |||||| ||||||||||||    
T  33694935 ttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttctt 33694998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 12466438 - 12466481
Alignment:
Q  71 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtc 114  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 14532131 - 14532057
Alignment:
Q  127 aattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagattt 201  Q
    |||| ||||||| || |||||||| ||||||  ||||||||||| ||||| |||| |||||||| ||||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagattt 14532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 42976369 - 42976602
Alignment:
Q  71 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  42976369 cagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagaca 42976468  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 270  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| |||||| ||||||    
T  42976469 agtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatcaattctctctcc 42976568  T
Q  271 t-tttatttcccnnnnnnnatttatccatattct 303  Q
    | ||||||||||       |||||||||||||||    
T  42976569 tctttatttccctttctttatttatccatattct 42976602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 27292985 - 27293164
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 27293084  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27293085 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27293164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 250
Target Start/End: Original strand, 4919059 - 4919232
Alignment:
Q  78 ttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggacaagttta 176  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaagttta 4919158  T
Q  177 tttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||| |||||||| ||||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  4919159 tttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 4919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 20133410 - 20133499
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 262  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 20133499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 55919463 - 55919365
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 55919365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 28679508 - 28679606
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||| ||||||||||  |||| ||||||||| ||| ||| |||||||||||   |||||||||||||||||||||||||||||||||  |||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcct 28679606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 45989679 - 45989606
Alignment:
Q  180 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 253  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 45989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 42069115 - 42069042
Alignment:
Q  180 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 253  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 42069042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 47031528 - 47031455
Alignment:
Q  180 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 253  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 47031455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 15531287 - 15531234
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 226  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 281
Target Start/End: Complemental strand, 31658998 - 31658787
Alignment:
Q  71 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    ||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||    
T  31658998 cagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagaca 31658899  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 270  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| || |||||| ||||||    
T  31658898 agtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatcaattctctctcc 31658799  T
Q  271 t-tttatttccc 281  Q
    | ||||||||||    
T  31658798 tctttatttccc 31658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 50650570 - 50650391
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 50650471  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  50650470 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 50650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 12938455 - 12938640
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  12938455 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 12938554  T
Q  186 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  12938555 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 12938640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 5232946 - 5233047
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 272  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  273 tt 274  Q
    ||    
T  5233046 tt 5233047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 20104322 - 20104423
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 272  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcctt 20104421  T
Q  273 tt 274  Q
    ||    
T  20104422 tt 20104423  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 39833307 - 39833218
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 262  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 39833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 29833329 - 29833444
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  29833329 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 29833428  T
Q  186 cttaaaggttagattt 201  Q
    ||||| ||||||||||    
T  29833429 cttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 33216833 - 33216657
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||| | | ||||||||| |||| |||| ||||||||||  | |||  |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  33216833 agtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatatgttccaccatagaca 33216734  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 247  Q
      |||| ||||||||||||| ||||||||||  |||| || |||  |||| ||||||  ||||||| ||| ||||||    
T  33216733 gatttacttcatgatcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 244  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 29703612 - 29703559
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 226  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 53282294 - 53282347
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 226  Q
    |||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 4293032 - 4293095
Alignment:
Q  6 tgtaatagggtgcagacccactcctgcc--gattttaatgcatttcttagcctttatcaaaaaa 67  Q
    ||||||||||||||| ||||||||||||    ||||||||||||| ||||||||||| ||||||    
T  4293032 tgtaatagggtgcaggcccactcctgccttttttttaatgcattttttagcctttataaaaaaa 4293095  T

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Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 30624903 - 30625082
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttcatatgttccaccatagaca 30625002  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    |||||||||||  || |||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  30625003 agtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 30625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 41413606 - 41413442
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  41413606 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 41413507  T
Q  186 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | |||||||||||||||||    
T  41413506 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttctt 41413442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 1828466 - 1828651
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  1828466 ccaatcagatttcaagccatgacacgtcagatgttatgacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 1828565  T
Q  186 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  1828566 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 1828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 40313931 - 40314116
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  40313931 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 40314030  T
Q  186 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  40314031 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 40314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 31482247 - 31482071
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||| | | |||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  31482247 agtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagaca 31482148  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 247  Q
      |||| ||||||||||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  31482147 gatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 24788400 - 24788302
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 24788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 39884696 - 39884749
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 226  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 27286203 - 27286382
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaatttt-aatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  ||||||| |||||||| |||||||| ||||||| ||||||| ||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttcatatgttccaccatagaca 27286302  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27286303 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 52385992 - 52385813
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||| || ||||||| ||| ||||| ||| || | ||||||| ||||||| ||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttcatatgttccaccatagaca 52385893  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||||||||| |||||| | ||||||||||  ||| ||| ||| ||||||||||||  | |||||||||||||||||||    
T  52385892 agtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttctt 52385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 270
Target Start/End: Original strand, 39241614 - 39241793
Alignment:
Q  88 caatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 186  Q
    |||||| |||| |||| || ||||||||||||| | |||||||| ||||||| | |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  39241614 caatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatc 39241712  T
Q  187 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 270  Q
    |||| |||||||||||| ||   | | | ||||||||||||  |||||||||||||||||||||||| |  |||||| ||||||    
T  39241713 ttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttcttctaattacaattctctctcc 39241793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 12981521 - 12981619
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 12981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 45348344 - 45348246
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 45325704 - 45325635
Alignment:
Q  180 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttct 249  Q
    ||||||||||| ||||||||||| || |||| ||| |||||||||||   ||||||||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 14096295 - 14096474
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 14096394  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||||||||| ||||||||  |||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  14096395 agtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 14096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 18977200 - 18977078
Alignment:
Q  160 caccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacca 259  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||  ||||||||||| | ||||||||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  260 attcgctctcct-tttatttccc 281  Q
    |||  ||||||| ||||||||||    
T  18977100 attatctctcctctttatttccc 18977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 37078947 - 37079048
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 272  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  273 tt 274  Q
    ||    
T  37079047 tt 37079048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 15330735 - 15330833
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 15330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 37261773 - 37261675
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 37261675  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 14810191 - 14810093
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 14810093  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 16429864 - 16429962
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcct 16429962  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 17690604 - 17690702
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 17690702  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 244  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 226  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 18977264 - 18977214
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag 122  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  18977264 agtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtag 18977214  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 250
Target Start/End: Original strand, 19436711 - 19436890
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| ||||| |||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 19436810  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 250  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| ||||||||||||  | | |||||||||||||||||    
T  19436811 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttctt 19436890  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 72 - 246
Target Start/End: Complemental strand, 29834123 - 29833948
Alignment:
Q  72 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 170  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||| || ||||| | ||||||||| |||||||| ||||||| ||||||| ||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttcatatgttccaccatagaca 29834024  T
Q  171 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttt 246  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| |||||||||||   | ||| |||||||||||    
T  29834023 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatttt 29833948  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 47327942 - 47328043
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 272  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  273 tt 274  Q
    ||    
T  47328042 tt 47328043  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 29258440 - 29258562
Alignment:
Q  86 gccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||||||||||||| ||    
T  29258440 gccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataat 29258539  T
Q  186 c-ttaaaggttagatttacttgg 207  Q
    | |||| ||||||||||||||||    
T  29258540 ctttaacggttagatttacttgg 29258562  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 45972423 - 45972521
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45972521  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 29243380 - 29243462
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 257  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 29243462  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 253
Target Start/End: Original strand, 6442633 - 6442706
Alignment:
Q  180 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 253  Q
    |||||||||||  |||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 6442706  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 34094118 - 34094187
Alignment:
Q  184 atcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 253  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 34094187  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 13802843 - 13802682
Alignment:
Q  87 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 185  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  13802843 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 13802744  T
Q  186 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 247  Q
    ||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  13802743 cttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Original strand, 531684 - 531782
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    |||||||||| || |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 30945527 - 30945445
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 257  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 30945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 23613574 - 23613705
Alignment:
Q  123 gacaaattttaatatggaccacttgctccatatgtcccaccatggacaa-gtttatttcatgatcttaaaggttagatttacttggtctatatattattg 221  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| ||  ||| ||| | |||||||| ||||||||||  |||||||  ||  |||||    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  222 tggtacgtcatctacacatgatttttcttcta 253  Q
    ||||||  | |||||||||||||||| |||||    
T  23613674 tggtacagcctctacacatgatttttgttcta 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 244  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 23614215 - 23614338
Alignment:
Q  126 aaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcat--gatcttaaaggttagatttacttggtctatatattattgtg 223  Q
    ||||| |||||| ||||||||| || ||||||  ||| |||||||| ||| |||  |  |||||||| ||||||||||  |||||||  ||| |||||||    
T  23614215 aaattctaatatagaccacttgatcaatatgtttcactatggacaacttttttttttaagatcttaacggttagatttgtttggtctccataatattgtg 23614314  T
Q  224 gtacgtcatctacacatgattttt 247  Q
    | ||  | ||||||||||||||||    
T  23614315 gcacaccctctacacatgattttt 23614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 30783 - 30685
Alignment:
Q  173 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 271  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 30685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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