View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18528_low_1 (Length: 577)
Name: NF18528_low_1
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18528_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 32063896 - 32063333
Alignment:
| Q |
1 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnnnngaagttatttttct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32063896 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagaaaaaaagaagttatttttct |
32063797 |
T |
|
| Q |
101 |
aatgtttgtttagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatggattttcatcgacctt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32063796 |
aatgtttgtttagccatttattctctttcttatgaccattgtgttttatcaataaaaatcaaattttcttagtgttctttgatggattttcatcgacctt |
32063697 |
T |
|
| Q |
201 |
gagaatgaacgttgtgtcttagacatgcaattggaggggaggagacttaaacattcaannnnnnnnatgttccatgaaatgcttatatgatttttcannn |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
32063696 |
gagaatgaacgttgtgtcttagacatgcaattgaaggggaggagacttaaaaattcaattttttttatgttccatgaaatgcttatatgattttttttat |
32063597 |
T |
|
| Q |
301 |
nnnnnn-----gttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaag |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32063596 |
tttttatttttgttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaag |
32063497 |
T |
|
| Q |
396 |
agctggaaatggtgaatggaggatagttaaaaggaaagaggagtttgctcattcaaacaatcaattgattgtgataaagaacacatatgtttactggata |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32063496 |
agctggaaatggtgaatggaggatagttaaaaggaaagaggagtttgctcattcaaacaatcaattgattgtgataaagaacacatatgtttattggata |
32063397 |
T |
|
| Q |
496 |
gggcaaggaaatcaagctctgatgacacgatggtggatgcatgaatttgtcatcggtagaattt |
559 |
Q |
| |
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| T |
32063396 |
gggcaaggaaatcaagctctgatgacacgatggtggatgcatgaatttgtcatcggtagaattt |
32063333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 307 - 548
Target Start/End: Complemental strand, 32071228 - 32070987
Alignment:
| Q |
307 |
gttgcagaaaatagatactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatg |
406 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||| |
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| T |
32071228 |
gttgcagaaaataggtactctttggagcataggaagtactatttctttgatctcaggaaccgtaggttccaaaatatggatgcaacaccagctggaaatg |
32071129 |
T |
|
| Q |
407 |
gtgaatggaggatagttaaaaggaaagaggagtttgctcattcaaacaatcaattgattgtgataaagaacacatatgtttactggatagggcaaggaaa |
506 |
Q |
| |
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|||||||||| || ||| || |||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |
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| T |
32071128 |
gtgaatggagaatggttgaatggaacgaagagtttgctctttcaaacaatcaattgattgtgagaaagaacacatatgtttactggagagtgcaaggaag |
32071029 |
T |
|
| Q |
507 |
tcaagctctgatgacacgatggtggatgcatgaatttgtcat |
548 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||||| |
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| T |
32071028 |
ccaagctgtgatgacacaatggtggatgcatgaatttgtcat |
32070987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 26 - 258
Target Start/End: Complemental strand, 32071674 - 32071442
Alignment:
| Q |
26 |
gaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaagnnnnnnngaagttatttttctaatgtttgtttagccctttattctc |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
32071674 |
gaatttgatgtatttcaaactgagccatggaggctgccacgaggtttgtgaaaggaaaaaaatagttatttttctaatgttttcttagccctttattctc |
32071575 |
T |
|
| Q |
126 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcttggtgttctttgatggattttcatcgaccttgagaatgaacgttgtgtcttagaca |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
32071574 |
tttcttatgaccattgtgttttatcaataaaaatcaaattttcctagtgttctttgatggattttcattaatcttgagaatgaacgttgtgtcttagaca |
32071475 |
T |
|
| Q |
226 |
tgcaattggaggggaggagacttaaacattcaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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| T |
32071474 |
tgcaattggaggggaggagacttaaaaattcaa |
32071442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 332 - 560
Target Start/End: Complemental strand, 32050654 - 32050426
Alignment:
| Q |
332 |
agcataggaagtactatttctttgatctcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatggtgaatggaggatagttaaaaggaa |
431 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||| |
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|
| T |
32050654 |
agcatatgaggtactatttctttgatatcaggaaccgtaggttcgagaatatggatgcaagaagagctggaaatggtgaatggagaatatatgagaggaa |
32050555 |
T |
|
| Q |
432 |
agaggagtttgctcattcaaacaatcaattgattgtgataaagaacacatatgtttactggatagggcaaggaaatcaagctctgatgacacgatggtgg |
531 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||| ||| | ||||||||||||||||||||||||| |||| || |
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| T |
32050554 |
tgaggagtttgctctttcaaacaatcaattgattgggagaaagaacacatttgtttaccggagaatacaaggaaatcaagctctgatgacacaatggagg |
32050455 |
T |
|
| Q |
532 |
atgcatgaatttgtcatcggtagaatttt |
560 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
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| T |
32050454 |
atgcatgaatttgtcatcggtacaatttt |
32050426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 32050816 - 32050760
Alignment:
| Q |
111 |
tagccctttattctctttcttatgaccattgtgttttatcaataaaaatcaaatttt |
167 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32050816 |
tagccctttattctttttcttatgatcattgtgttttatcaataaaaatcaaatttt |
32050760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32050897 - 32050820
Alignment:
| Q |
1 |
ccaaccttttccaaatgccatgtcagaatttgatgtatttcaaactgagccatggagcctgccagcaggtttgtgaaa |
78 |
Q |
| |
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||||||| |||||||| | ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
32050897 |
ccaacctcttccaaatctcttgttagaatttgatgtatttcaaactgagccatggaagctgccaagaggtttgtgaaa |
32050820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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