View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18528_low_10 (Length: 280)

Name: NF18528_low_10
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18528_low_10
NF18528_low_10
[»] chr7 (7 HSPs)
chr7 (1-266)||(22534096-22534361)
chr7 (1-266)||(22525505-22525770)
chr7 (145-191)||(7327775-7327821)
chr7 (145-196)||(20456102-20456153)
chr7 (208-263)||(24391071-24391126)
chr7 (226-260)||(20414584-20414618)
chr7 (227-265)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (142-263)||(8199-8320)
scaffold0128 (145-246)||(25251-25352)
scaffold0128 (142-183)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (211-263)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (145-191)||(2910627-2910673)
chr4 (145-185)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (208-260)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 22534096 - 22534361
Alignment:
Q  1 ttgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgcttctggaaccctgccacgagaacaatatccgatatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  22534096 ttgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgcttctggaaccccgccacgagaacaatatctgatatat 22534195  T
Q  101 taagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcaga 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534196 taagaactgatttcagttgggatgattgggaatttcatccgttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcaga 22534295  T
Q  201 aggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534296 aggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 22534361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 22525770 - 22525505
Alignment:
Q  1 ttgcttttcttgcgcggttatgatcatgatgagggtactaaatttcgaagagtattgtgccgcttctggaaccctgccacgagaacaatatccgatatat 100  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||  || |||||| ||||||||||| ||||| || ||||||||||||||||||||||    
T  22525770 ttgcttttcttgcgcggttatggtcatggtgagggtactaaatttaaaaaagtattatgccgcttctgaaaccccgctacgagaacaatatccgatatat 22525671  T
Q  101 taagaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcaga 200  Q
    | ||||||||||||  ||  |||||||| |||||| ||   || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  22525670 tgagaactgatttcgattatgatgattgcgaattttatgagtttgtgtttggttatgataattcaaccgacacctataaagttgtagccttaaattcagg 22525571  T
Q  201 aggtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 266  Q
     |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  22525570 cggtaatgatgtgagagtcattaccatgggtgataatgtttggagaactattaaaacttttcctga 22525505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 7327775 - 7327821
Alignment:
Q  145 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 191  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  7327775 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 7327821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 20456102 - 20456153
Alignment:
Q  145 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 196  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  20456102 gtgttttgttttgataattcaaccgacacatataaggttgtggccttgaatt 20456153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 24391071 - 24391126
Alignment:
Q  208 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 263  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  24391071 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 20414584 - 20414618
Alignment:
Q  226 ttgggtgataatgtttggagaactattaaaagttt 260  Q
    |||||||||||||||||||||| ||||||||||||    
T  20414584 ttgggtgataatgtttggagaagtattaaaagttt 20414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 46769050 - 46769088
Alignment:
Q  227 tgggtgataatgtttggagaactattaaaagttttcctg 265  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  46769050 tgggtgataatatttggagaactattcaaagttttcctg 46769088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 8199 - 8320
Alignment:
Q  142 ttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgttt 241  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||   ||||| ||  ||||||||||||  ||||||||||||||||    
T  8199 ttcgtgtttggttatgatagttcaaccgacacttataaagttgtggccttaagttcaactggtaacgaaatgagagtctttagtttgggtgataatgttt 8298  T
Q  242 ggagaactattaaaagttttcc 263  Q
    |||||  |||| |||| |||||    
T  8299 ggagatatattcaaagatttcc 8320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 25251 - 25352
Alignment:
Q  145 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgga 244  Q
    |||||||||||||| | || ||| ||||| |||||||||||  | |||| ||||   ||||| || |||| ||||||||  |||||||||||||||||||    
T  25251 gtgtttggttatgagagtttaactgacacttataaggttgtgtcattaagttcaactggtaacgaagtgaaagtctttagtttgggtgataatgtttgga 25350  T
Q  245 ga 246  Q
    ||    
T  25351 ga 25352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 3740 - 3781
Alignment:
Q  142 ttcgtgtttggttatgataattcaaccgacacctataaggtt 183  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3740 ttcgtgtttgtttatgataattcaaccgacatttataaggtt 3781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  211 gtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 263  Q
    |||||||||||||  ||||  ||||||||||||||||||||| ||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 2910627 - 2910673
Alignment:
Q  145 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 191  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 11982135 - 11982095
Alignment:
Q  145 gtgtttggttatgataattcaaccgacacctataaggttgt 185  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  11982135 gtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  208 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttt 260  Q
    ||||||||||| || |  |||||||||||||||||||||| |||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University