View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18528_low_13 (Length: 238)
Name: NF18528_low_13
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18528_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 3238779 - 3238992
Alignment:
| Q |
13 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
112 |
Q |
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| T |
3238779 |
atcatcactgaaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagac |
3238878 |
T |
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| Q |
113 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238879 |
gtactcagaaagtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtat |
3238978 |
T |
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| Q |
213 |
gttttcgatatttt |
226 |
Q |
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|||||||||||||| |
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| T |
3238979 |
gttttcgatatttt |
3238992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
48 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
121 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||| |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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