View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18528_low_4 (Length: 437)
Name: NF18528_low_4
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18528_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 40533224 - 40532837
Alignment:
| Q |
20 |
ttaagggcaacaatttcatagtttgatagtggtgcttcttaattcttcaacattttatttttgacagaaaaatgnnnnnnnaagaagagaaatcaaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40533224 |
ttaagggcaacaatttcatagtttgatagtggtgcttcttaattcttcaacattttatttttgacagaaaaatgtttttttaagaagagaaatcaaatcc |
40533125 |
T |
|
| Q |
120 |
ccaatagaagaaggtaaaattctatttaatgataattgggggcataaacatgccccaaaaagaaattagtaaaaacagaaattaatgtaacaccttaatt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40533124 |
ccaatagaagaaggtaaaattctatttaatgata----------------tgccccaaaaagaaattagtaaaaacagaaattaatgtaacaccttaatt |
40533041 |
T |
|
| Q |
220 |
atttgtaatttcactctagcctaagtatccaacagaaaaatgctctatgttgtttgctatgaagtgtgcttattttatttcttctgacaaaataatattt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40533040 |
atttgtaatttcactctagcctaagtatccaacagaaaaatgctctatgttgtttgctatgaagtgtgcttattttattttttctgacaaaataatattt |
40532941 |
T |
|
| Q |
320 |
atttactcaaatttg-nnnnnnnnntcgcaatatacaggtttataacgggaaaataaagcctgcaaatttatgaaaattaaagtgtttggagtagctatg |
418 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40532940 |
atttactcaaatttgaaaaaaaaaatcgcaatatccaggtttataacgggaaaataaagcctgcaaatttatgaaaattaaagtgtttggagtagctatg |
40532841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University