View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18528_low_5 (Length: 436)

Name: NF18528_low_5
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18528_low_5
NF18528_low_5
[»] chr8 (3 HSPs)
chr8 (16-428)||(4518486-4518895)
chr8 (197-258)||(37863693-37863754)
chr8 (399-431)||(8802397-8802429)
[»] scaffold1202 (1 HSPs)
scaffold1202 (399-431)||(1856-1888)
[»] chr3 (1 HSPs)
chr3 (396-431)||(28173723-28173758)
[»] chr7 (1 HSPs)
chr7 (389-419)||(3227678-3227708)
[»] scaffold0062 (2 HSPs)
scaffold0062 (398-431)||(49933-49966)
scaffold0062 (398-431)||(62472-62505)
[»] chr2 (3 HSPs)
chr2 (398-431)||(15701021-15701054)
chr2 (399-431)||(18537826-18537858)
chr2 (399-431)||(30714272-30714304)
[»] chr5 (1 HSPs)
chr5 (399-431)||(31648259-31648291)
[»] chr1 (1 HSPs)
chr1 (403-431)||(48471864-48471892)


Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 4518486 - 4518895
Alignment:
Q  16 cacttatggaaaaggttcacgttgaatgctccttcacaatgatgctagattcttgcagaaattgaagcatgttcaatttcaatttatctcatccacgtgg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4518486 cacttatggaaaaggttcacgttgaatgctcattcacaatgatgctagattcttgcagaaattgaagcatgttcaatttcaatttatctcatccacgtgg 4518585  T
Q  116 agtcatgatacaaaaagatggagtagtattgataatataaaaagatcattgtttgcaaaacctctaggcttatatctaagagattgttttggacgcgata 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4518586 ggtcatgatacaaaaagatggagtagtattgataatataaaaagatcattgtttgcaaaacctctaggcttatatctaagagattgttttggacgcgata 4518685  T
Q  216 tgtttgaagtccgttgagcaagaagttggcatgagtgggatcacggatagggtttttgcaatatccgtcatccttactatgttttcgaaatcaacttaca 315  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4518686 tgtttgaagtccgctgagcaagaagttggcatgagtgggatcacggatagggtttttgcaatattcgtcatccttactatgttttcgaaatcaacttaca 4518785  T
Q  316 cttttgatgattcccctcaactcaacgcacctcttttgattgtgtatgactatgagccacactatatcaagttgtagtttttattaggctaaagtgcact 415  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4518786 cttt---tgattcccctcaactcaacgcacctcttttgattgtgtatgattatgagccacactatatcaagttgtagtttttattaggctaaagtgcact 4518882  T
Q  416 tttcgtcccctat 428  Q
    ||||| |||||||    
T  4518883 tttcgccccctat 4518895  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 37863693 - 37863754
Alignment:
Q  197 gattgttttggacgcgatatgtttgaagtccgttgagcaagaagttggcatgagtgggatca 258  Q
    |||||||||| ||| ||| |||||||| ||   |||| ||||||||||||||||||||||||    
T  37863693 gattgttttgaacgtgatttgtttgaaatcgcctgagaaagaagttggcatgagtgggatca 37863754  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 8802397 - 8802429
Alignment:
Q  399 ttaggctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||||||||||||||||||| ||||||    
T  8802397 ttaggctaaagtgcacttttcgtcccgtatgtt 8802429  T

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Target: scaffold1202 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1202
Description:

Target: scaffold1202; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 1856 - 1888
Alignment:
Q  399 ttaggctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||||||||||||||||||||||||||    
T  1856 ttaggctaaagtgcacttttcgtcccctatgtt 1888  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Original strand, 28173723 - 28173758
Alignment:
Q  396 ttattaggctaaagtgcacttttcgtcccctatgtt 431  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28173723 ttattaggctaaagtgcacttttcgccccctatgtt 28173758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 3227708 - 3227678
Alignment:
Q  389 gtagtttttattaggctaaagtgcacttttc 419  Q
    |||||||||||||||||||||||||||||||    
T  3227708 gtagtttttattaggctaaagtgcacttttc 3227678  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 49966 - 49933
Alignment:
Q  398 attaggctaaagtgcacttttcgtcccctatgtt 431  Q
    ||||||||||||||||||||||| ||||||||||    
T  49966 attaggctaaagtgcacttttcgccccctatgtt 49933  T

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Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 62505 - 62472
Alignment:
Q  398 attaggctaaagtgcacttttcgtcccctatgtt 431  Q
    ||||||||||||||||||||||| ||||||||||    
T  62505 attaggctaaagtgcacttttcgccccctatgtt 62472  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 431
Target Start/End: Complemental strand, 15701054 - 15701021
Alignment:
Q  398 attaggctaaagtgcacttttcgtcccctatgtt 431  Q
    ||||||||||||||||||||||| ||||||||||    
T  15701054 attaggctaaagtgcacttttcgccccctatgtt 15701021  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 18537826 - 18537858
Alignment:
Q  399 ttaggctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||| ||||||||||||||||||||||    
T  18537826 ttaggctaaactgcacttttcgtcccctatgtt 18537858  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 30714272 - 30714304
Alignment:
Q  399 ttaggctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||||||||||||||| ||||||||||    
T  30714272 ttaggctaaagtgcacttttcgccccctatgtt 30714304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 31648291 - 31648259
Alignment:
Q  399 ttaggctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||| ||||||||||||||||||||||    
T  31648291 ttaggctaaactgcacttttcgtcccctatgtt 31648259  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Original strand, 48471864 - 48471892
Alignment:
Q  403 gctaaagtgcacttttcgtcccctatgtt 431  Q
    |||||||||||||||||||||||||||||    
T  48471864 gctaaagtgcacttttcgtcccctatgtt 48471892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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