View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18528_low_6 (Length: 335)

Name: NF18528_low_6
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18528_low_6
NF18528_low_6
[»] chr6 (3 HSPs)
chr6 (19-335)||(28138290-28138606)
chr6 (154-225)||(6982835-6982906)
chr6 (156-219)||(10501975-10502038)
[»] chr5 (4 HSPs)
chr5 (138-225)||(33417416-33417503)
chr5 (18-88)||(33417295-33417366)
chr5 (160-229)||(31610042-31610111)
chr5 (135-174)||(15867381-15867420)
[»] chr8 (5 HSPs)
chr8 (135-225)||(6596498-6596588)
chr8 (19-94)||(40715811-40715887)
chr8 (19-89)||(6596381-6596452)
chr8 (154-223)||(19168178-19168247)
chr8 (135-220)||(40715928-40716013)
[»] chr7 (6 HSPs)
chr7 (135-225)||(8308208-8308298)
chr7 (135-220)||(38836121-38836206)
chr7 (23-89)||(38836008-38836075)
chr7 (154-225)||(49094543-49094614)
chr7 (154-226)||(30559359-30559431)
chr7 (156-219)||(25862613-25862676)
[»] chr2 (9 HSPs)
chr2 (160-225)||(21949895-21949960)
chr2 (19-94)||(18559840-18559916)
chr2 (176-229)||(41411516-41411569)
chr2 (19-55)||(21950067-21950103)
chr2 (176-223)||(40275158-40275205)
chr2 (160-229)||(9446973-9447042)
chr2 (154-227)||(14555887-14555960)
chr2 (135-211)||(18559723-18559799)
chr2 (154-226)||(38346691-38346763)
[»] chr4 (4 HSPs)
chr4 (155-229)||(39735815-39735889)
chr4 (135-220)||(2048966-2049051)
chr4 (154-223)||(3958945-3959014)
chr4 (19-89)||(2048850-2048920)
[»] chr1 (4 HSPs)
chr1 (156-229)||(42080685-42080758)
chr1 (176-223)||(43403894-43403941)
chr1 (21-55)||(17867361-17867395)
chr1 (19-93)||(17937633-17937709)
[»] chr3 (2 HSPs)
chr3 (288-335)||(4292984-4293031)
chr3 (154-198)||(11536252-11536296)
[»] scaffold0141 (1 HSPs)
scaffold0141 (157-223)||(16533-16599)
[»] scaffold0098 (1 HSPs)
scaffold0098 (19-55)||(21800-21836)
[»] scaffold0060 (1 HSPs)
scaffold0060 (154-223)||(18923-18991)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 28138606 - 28138290
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacnnnnnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  28138606 tcagagaagtgtggacattttacaaaagttttgggggattatactaatggagagcatgattctagccttgtctgtctggcaacaaccaagaacaaaaagg 28138507  T
Q  119 nnnnnnnnnnnnnnnntagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaata 218  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138506 aaaaaaagcagaaaaatagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaata 28138407  T
Q  219 tttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtctccat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138406 tttgtgactgtatttgttgtttgacagtttcctttctttggtttactagcaaagctatgcttctcgccctttcttttatcagagacattttggtctccat 28138307  T
Q  319 ttttagattctctcatt 335  Q
    |||||||||||||||||    
T  28138306 ttttagattctctcatt 28138290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 6982835 - 6982906
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||| ||||||| |||||||| |||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  6982835 agcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga 6982906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 10502038 - 10501975
Alignment:
Q  156 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 219  Q
    ||||||||||||||||||  |||||||||| |||||||||||| | ||||| ||||| ||||||    
T  10502038 cacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatat 10501975  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 33417416 - 33417503
Alignment:
Q  138 acaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||||||||||| || |||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33417416 acaagtttcaccaaaaagcacaagtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatcctaaatatttgtga 33417503  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 33417295 - 33417366
Alignment:
Q  18 atcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattctagccttg 88  Q
    |||||||| |||| |||||||||||| ||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  33417295 atcagagatgtgtcgacattttacaacagttttgaggggattatactattgaggagcatgagtctagccttg 33417366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 31610042 - 31610111
Alignment:
Q  160 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 229  Q
    |||||| |||||||| |||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||    
T  31610042 agtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgt 31610111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 15867420 - 15867381
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacata 174  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15867420 tagacaagtttcaccaaaaagcacaagtagtaagcacata 15867381  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 6596498 - 6596588
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||||||||||||||||| |||| ||||||| |||||||  |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  6596498 tagacaagtttcaccgaaaagcataagtagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatatttgtga 6596588  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 40715811 - 40715887
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagtttt-gggggattatactaatggagagcatgattctagccttgtctgtc 94  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||  |||||||| ||||||||||| ||||    
T  40715811 tcagagaagtgtggacattttacaaaagttttggggggattataccaatgaggagcatgagtctagccttgtttgtc 40715887  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 6596381 - 6596452
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttggggga-ttatactaatggagagcatgattctagccttgt 89  Q
    ||||||||||||||| |||||||||||||||||||||| ||||  || ||  |||||||| |||||||||||    
T  6596381 tcagagaagtgtggatattttacaaaagttttgggggagttatcatactgaggagcatgaatctagccttgt 6596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 19168178 - 19168247
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||||| || | |||||||| ||||||||||||||||||||||  ||||||| ||| | ||| ||||||    
T  19168178 agcacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaaaatttgt 19168247  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 40715928 - 40716013
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 220  Q
    ||||||| ||||||| || | |||||||||| |||||||| |||||||||  ||||| | ||   ||||||| |||||||||||||    
T  40715928 tagacaaatttcaccaaaaaacacaagtagtgagcacatacaaactcgtttcaaaaaagatgctatcaaaagcaatcctaaatatt 40716013  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 8308298 - 8308208
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||||||||||||| ||| || ||||||||| |||||||| |||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8308298 tagacaagtttcactgaaaagtacaagtagtgagcacatacaaactcgttctaaaaagaatgtaatcaaaagtaatcccaaatatttgtga 8308208  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 38836121 - 38836206
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 220  Q
    ||||||||||||||| || |||||||||||| |||| ||| |||||||||| ||||| |||||  ||||||| ||||| |||||||    
T  38836121 tagacaagtttcaccaaaaagcacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatatt 38836206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 38836008 - 38836075
Alignment:
Q  23 agaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 89  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  38836008 agaagtgtagacattttacaaaagttttggggcgattataccaatgaggagcatgagtctagccttgt 38836075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 49094614 - 49094543
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||||||||||| |||||||| |||| ||||| ||||| |||||  ||||||| ||||| ||||||||||||    
T  49094614 agcacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatatttgtga 49094543  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 30559431 - 30559359
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 226  Q
    ||||||||| || |||||||| ||||| |||| |||||||||||  ||||||| ||||| ||| |||||||||    
T  30559431 agcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgac 30559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 25862676 - 25862613
Alignment:
Q  156 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatat 219  Q
    |||||||||| |||||||  ||||||| || |||||||||||| | ||||| ||||||||||||    
T  25862676 cacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatcctaaatat 25862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 21949960 - 21949895
Alignment:
Q  160 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtga 225  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  21949960 agtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatatttgtga 21949895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 18559916 - 18559840
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttg-ggggattatactaatggagagcatgattctagccttgtctgtc 94  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||||| || |||||| |||||||||    
T  18559916 tcagagaagtgtgaacattttacaaaagttttgaggggattatactaatgaggagcacgaatctagctttgtctgtc 18559840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 41411569 - 41411516
Alignment:
Q  176 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 229  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||    
T  41411569 aaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatttgtgactgt 41411516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21950103 - 21950067
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttggggg 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  21950103 tcagagaagtgtggacattttacaaaagttttggggg 21950067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 40275158 - 40275205
Alignment:
Q  176 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  40275158 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 40275205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 9446973 - 9447042
Alignment:
Q  160 agtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 229  Q
    |||||| |||||| | |||| ||||| |||||||||||  ||||||| ||||| |||||| |||||||||    
T  9446973 agtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgt 9447042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 14555887 - 14555960
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgact 227  Q
    |||||||| ||| | || ||| |||||||||| |||||||||||  ||||||| ||||| |||||| |||||||    
T  14555887 agcacaagcagtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact 14555960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 18559799 - 18559723
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatc 211  Q
    ||||||||||||||| || || | |||||   |||| ||| ||||||||||||||||||| ||| ||||||| ||||    
T  18559799 tagacaagtttcaccaaaaagtataagtaacgagcagatacaaactcgttctaaaaagggcgtaatcaaaagcaatc 18559723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 38346763 - 38346691
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgac 226  Q
    |||||||||||| |||| ||| | ||||||||  |||||| ||| || ||||  |||||||||||||||||||    
T  38346763 agcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgtgac 38346691  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 39735815 - 39735889
Alignment:
Q  155 gcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 229  Q
    ||||||||||| |||||||| |||||||||| || ||||||||| ||||||| ||||| |||||| |||||||||    
T  39735815 gcacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatatatgtgactgt 39735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 2048966 - 2049051
Alignment:
Q  135 tagacaagtttcaccgaagagcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatt 220  Q
    ||||||||||||| | || |||||||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||| |||||||    
T  2048966 tagacaagtttcatcaaaaagcacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatatt 2049051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 3959014 - 3958945
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3959014 agcacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 3958945  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 2048850 - 2048920
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttgggg-gattatactaatggagagcatgattctagccttgt 89  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||| ||||  |||||||| |||||||||||    
T  2048850 tcagagaagtgtagacattt-acaaaagttttggggggattataccaatgaggagcatgagtctagccttgt 2048920  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 42080758 - 42080685
Alignment:
Q  156 cacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgtgactgt 229  Q
    |||||||||| |||||||  |||||||||| |||||||||||| ||||||| ||||| |||||| | |||||||    
T  42080758 cacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttgactgt 42080685  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 43403941 - 43403894
Alignment:
Q  176 aaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  43403941 aaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatatttgt 43403894  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 17867395 - 17867361
Alignment:
Q  21 agagaagtgtggacattttacaaaagttttggggg 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  17867395 agagaagtgtggacattttacaaaatttttggggg 17867361  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 17937633 - 17937709
Alignment:
Q  19 tcagagaagtgtggacattttac-aaaagttttgggg-gattatactaatggagagcatgattctagccttgtctgt 93  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| |||| ||  || ||||| |||| ||||||||||    
T  17937633 tcagagaagtgttgacattttacaaaaagttttggggtgattacactactgaggaacatgaatctaaccttgtctgt 17937709  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 4292984 - 4293031
Alignment:
Q  288 tttcttttatcagagacattttggtctccatttttagattctctcatt 335  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt 4293031  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 11536252 - 11536296
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgta 198  Q
    |||||||||||| |||||||| |||||||||  ||||||||||||    
T  11536252 agcacaagtagtgagcacatacaaactcgtttaaaaaagggtgta 11536296  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 16599 - 16533
Alignment:
Q  157 acaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||| ||| ||||||||||||||||||| || ||||||||  ||||||| ||||| ||||||||||    
T  16599 acaaggagtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatccaaaatatttgt 16533  T

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Target: scaffold0098 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21836 - 21800
Alignment:
Q  19 tcagagaagtgtggacattttacaaaagttttggggg 55  Q
    ||||| |||||||||||||||||||||||||||||||    
T  21836 tcagaaaagtgtggacattttacaaaagttttggggg 21800  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 18923 - 18991
Alignment:
Q  154 agcacaagtagtaagcacatataaactcgttctaaaaagggtgtagtcaaaagtaatcctaaatatttgt 223  Q
    ||||||| || | |||||||| ||||||||||| ||||||||||  ||||||| ||||| ||||||||||    
T  18923 agcacaattattgagcacatacaaactcgttct-aaaagggtgtcatcaaaagcaatcccaaatatttgt 18991  T

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