View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18528_low_8 (Length: 306)
Name: NF18528_low_8
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18528_low_8 |
 | |
|
| [»] scaffold0128 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 22533802 - 22534080
Alignment:
| Q |
19 |
cttatctatgaaatcctatcgtggcttaccgttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcg |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22533802 |
cttatctacgaaatcctatcgtggcttacagttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcg |
22533901 |
T |
|
| Q |
119 |
ccaaaatgcaccttaatcggtctgcaagaaacccacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22533902 |
ccaaaatgcaccttaatcggtctgcaagaaacccacaattgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctca |
22534001 |
T |
|
| Q |
219 |
tttactggaaaaccgttccatcacccttcctaaggatccttactaccagttgtgggacaacgtagttcccaatattctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22534002 |
tttactggaaaaccgttccatcacccttcctaaggatccttaccaccagttgtgggacaacgtagttcccaatattctt |
22534080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 22526064 - 22525786
Alignment:
| Q |
19 |
cttatctatgaaatcctatcgtggcttaccgttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcg |
118 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22526064 |
cttatctttgaaatcctatcatggcttacagttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcg |
22525965 |
T |
|
| Q |
119 |
ccaaaatgcaccttaatcggtctgcaagaaacccacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctca |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
22525964 |
ccaaaatgcaccttaaccggtctgcaagaaacccacacttgtcatcggaattccttatagatgatctcgattccaattttgtacacttccctcttgctca |
22525865 |
T |
|
| Q |
219 |
tttactggaaaaccgttccatcacccttcctaaggatccttactaccagttgtgggacaacgtagttcccaatattctt |
297 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
22525864 |
tttactggaaaacctttccatcacccttcctaaggatccttactaccggttgtgggacaaggtagttcccattattctt |
22525786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 7312115 - 7312042
Alignment:
| Q |
79 |
agtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
152 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||| | |||||| ||||||| |
|
|
| T |
7312115 |
agtaagtcttggaacactattatctctgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7312042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 7327399 - 7327471
Alignment:
| Q |
80 |
gtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
152 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||||||| |||||||||||| ||| | |||||| ||||||| |
|
|
| T |
7327399 |
gtaagtcttggaacactattatttctgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7327471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 7306983 - 7306911
Alignment:
| Q |
80 |
gtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
152 |
Q |
| |
|
||||||| ||||| || ||||| || |||||||||||| |||||||||||| ||| | |||||| ||||||| |
|
|
| T |
7306983 |
gtaagtcttggaacactattatttccgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7306911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 7748 - 7870
Alignment:
| Q |
27 |
tgaaatcctatcgtggcttaccgttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatg |
126 |
Q |
| |
|
|||||| |||||||||||| | || ||| ||| ||||| |||| |||||||||||||| |||||||| |||||||| ||||| |||| ||||||| |
|
|
| T |
7748 |
tgaaatactatcgtggcttccggtcaaatctcttatgcaaatgaagtgcgtcagtaagtcatggaaaactcttatctctcatcctccattcatcaaaatg |
7847 |
T |
|
| Q |
127 |
caccttaatcggtctgcaagaaa |
149 |
Q |
| |
|
||||||| ||| |||||| |||| |
|
|
| T |
7848 |
caccttagtcgatctgcacgaaa |
7870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 24800 - 24925
Alignment:
| Q |
27 |
tgaaatcctatcgtggcttaccgttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatg |
126 |
Q |
| |
|
|||||| |||| ||||||| | || ||| ||| |||||| |||| |||||||||||||| |||||||| | |||||| ||||| |||| |||||| |
|
|
| T |
24800 |
tgaaatactattgtggcttccggtaaaatctcttatgcagatgaagtgcgtcagtaagtcatggaaaactctcatctctaatccttcattcattaaaatg |
24899 |
T |
|
| Q |
127 |
caccttaatcggtctgcaagaaaccc |
152 |
Q |
| |
|
||||||| | | |||||| ||||||| |
|
|
| T |
24900 |
caccttagtagatctgcacgaaaccc |
24925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 31443867 - 31443751
Alignment:
| Q |
28 |
gaaatcctatcgtggcttaccgttaaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgc |
127 |
Q |
| |
|
|||||||| || |||||||| || ||| | ||||| || ||||||| || ||||| || ||||| || ||||||||||| |||| |||| ||||||| |
|
|
| T |
31443867 |
gaaatcctttcctggcttacggtgaaaactttgatgaagatgaaatgtgtgagtaaatcatggaacactcttatctctgattctaatttcgttaaaatgc |
31443768 |
T |
|
| Q |
128 |
accttaatcggtctgca |
144 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
31443767 |
atcttaatcgatctgca |
31443751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University