View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18528_low_9 (Length: 305)
Name: NF18528_low_9
Description: NF18528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18528_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 55116656 - 55116941
Alignment:
| Q |
1 |
tcttaagaagaaagggaaattaatgcgtgaaaacatgacaagaaaccggaagagtggctatagcaacaaaataaagacctcatgattactggtataagta |
100 |
Q |
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| T |
55116656 |
tcttaagaagaaagggaaattaatgcgtgaaaacatgacaagaaaccggaagagtggctatagcaacaaaataaagacctcatgattactggtataagta |
55116755 |
T |
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| Q |
101 |
aaggtacaaagacttggagcagatagcttaattttggcagttttagcaaattctgatgatttattacaaatagataaattaacaagggcttcacttcact |
200 |
Q |
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| T |
55116756 |
aaagtacaaagacttggagcagatagcttaattttggcagttttggcaaattctgatgatttattacaaatagataaattaacaagggcttcacttcact |
55116855 |
T |
|
| Q |
201 |
tgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctcat |
286 |
Q |
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| T |
55116856 |
tgatatgatgaagacatgtgcatcccttacctcacacctacagatgaacaaactattcgaccttttaaaggataaaaagggctcat |
55116941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 285
Target Start/End: Complemental strand, 36910130 - 36910041
Alignment:
| Q |
196 |
tcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctca |
285 |
Q |
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| T |
36910130 |
tcacttgatatgttgaggatttgagcatcctttacctcacagctactaatgaccaaactattcaacttggtaaaggcgaaaaagggctca |
36910041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 36629979 - 36629931
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttggca |
139 |
Q |
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| T |
36629979 |
ggtaaaagtgaaggtacaaagacttggaacagatagctcaattttggca |
36629931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 18359434 - 18359388
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttgg |
137 |
Q |
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| T |
18359434 |
ggtaaaagaaaaggtacaaagaattggagcagatagctcaattttgg |
18359388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 36603494 - 36603540
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttgg |
137 |
Q |
| |
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| T |
36603494 |
ggtaaaagaaaaggtacaaagaattggagcagatagctcaattttgg |
36603540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 36910221 - 36910187
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagata |
125 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
36910221 |
ggtaaaagtaaaggtacaaagacttggagcagata |
36910187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 20211295 - 20211343
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttggca |
139 |
Q |
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| T |
20211295 |
ggtaaaagtaaaggtacaaagactcggaccagataactcaattttggca |
20211343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 25597486 - 25597396
Alignment:
| Q |
195 |
ttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctca |
285 |
Q |
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|||||||||||||| |||||| | ||||||||||||||||| | |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
25597486 |
ttcacttgatatgaccaagacacgggcatcccttacctcacatttctgaatgaccaaactattcaacattttaaaggcgaaaaagggctca |
25597396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 25602379 - 25602330
Alignment:
| Q |
93 |
tataagtaaaggtacaaagacttggagcagatagcttaattttggcagtt |
142 |
Q |
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| T |
25602379 |
tataagtaaaggtacgaagacttggagtagatagttcaattttgtcagtt |
25602330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 19657757 - 19657802
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttg |
136 |
Q |
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|||||||||||||||||||||||||| || ||||| || ||||||| |
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| T |
19657757 |
ggtataagtaaaggtacaaagacttgaagtagataactcaattttg |
19657802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 19674596 - 19674641
Alignment:
| Q |
91 |
ggtataagtaaaggtacaaagacttggagcagatagcttaattttg |
136 |
Q |
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|||||||||||||||||||||||||| || ||||| || ||||||| |
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| T |
19674596 |
ggtataagtaaaggtacaaagacttgaagtagataactcaattttg |
19674641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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