View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18529_low_1 (Length: 487)

Name: NF18529_low_1
Description: NF18529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18529_low_1
NF18529_low_1
[»] chr1 (2 HSPs)
chr1 (18-286)||(52550004-52550285)
chr1 (283-463)||(52549805-52549984)
[»] chr2 (11 HSPs)
chr2 (286-470)||(11998657-11998841)
chr2 (287-467)||(12246278-12246457)
chr2 (144-286)||(7541177-7541319)
chr2 (283-463)||(7541339-7541518)
chr2 (143-282)||(12246485-12246624)
chr2 (284-386)||(12234233-12234335)
chr2 (143-286)||(12234069-12234212)
chr2 (284-460)||(14702523-14702697)
chr2 (291-376)||(12259535-12259620)
chr2 (196-266)||(14702412-14702482)
chr2 (151-286)||(12259651-12259786)
[»] chr7 (4 HSPs)
chr7 (389-473)||(6788733-6788817)
chr7 (391-467)||(27849023-27849099)
chr7 (393-468)||(17259458-17259533)
chr7 (393-468)||(17267161-17267236)
[»] chr3 (1 HSPs)
chr3 (28-70)||(50672316-50672358)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 52550285 - 52550004
Alignment:
Q  18 tctgcatcatatggtttcagcacactgttgttggaatggtttagataacatgtctctaccagaaaattattagacttaatgcatactaaacaaaaagaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550285 tctgcatcatatggtttcagcacactgttgttggaatggtttagataacatgtctctaccagaaaattattagacttaatgcatactaaacaaaaagaca 52550186  T
Q  118 acacttaaaaccttaact-------------aataaagaactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttc 204  Q
    ||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550185 acacttaaaaccttaactgagaaaaaacaaaaataaagaactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttc 52550086  T
Q  205 cagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52550085 cagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatt 52550004  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 283 - 463
Target Start/End: Complemental strand, 52549984 - 52549805
Alignment:
Q  283 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaat 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52549984 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaat 52549885  T
Q  383 atgggaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct 463  Q
    |   | ||||||||||||||| ||| || |||||||| || |||  ||||| ||| ||||||| |||||| ||||||||||    
T  52549884 a-cagtaattctcagcttcttgaattaattttttaatgtcctcacttgacaacctttctttgtgattggtaattgtaatct 52549805  T

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Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 11998657 - 11998841
Alignment:
Q  286 taatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaatatg 385  Q
    ||||||||| |  ||||||||||||||| ||||||||||||||||||||||| ||||||   | ||  ||||||||||||||||||||||||||||||||    
T  11998657 taatatcctttgactttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatg 11998756  T
Q  386 ggaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat 470  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998757 ggaaattctcagcttctttaatctactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat 11998841  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 287 - 467
Target Start/End: Complemental strand, 12246457 - 12246278
Alignment:
Q  287 aatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaatatgg 386  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||  || ||| ||||||||||||||| ||| ||||||||||| |    
T  12246457 aatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaatctctggtcttcaatat-g 12246359  T
Q  387 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt 467  Q
     ||||||||||| |||||||| || || || |||||||||  ||||| ||| ||||||||||| |||||||||||||||||    
T  12246358 aaaattctcagcctctttaattaatttgtttatttcttcacttgacaacctttctttgtaattagttattgtaatctcatt 12246278  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 144 - 286
Target Start/End: Original strand, 7541177 - 7541319
Alignment:
Q  144 actaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaac 243  Q
    ||||| |||||||||||||||| | || ||||||||||| |||  ||| ||||||||| ||||||||||||||||||||||| ||||| |||| |||||     
T  7541177 actaaatagtcttagctataatgtattccatccaactcttaagcccctctacatgatcctccagaacatctatttcaacttgttggttattctcatcaat 7541276  T
Q  244 caaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    |||||||||||||   ||||||| |||||| ||||||||||||    
T  7541277 caaattcgtggccttagcaattgtagattcaatcttctcaatt 7541319  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 283 - 463
Target Start/End: Original strand, 7541339 - 7541518
Alignment:
Q  283 aattaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaat 382  Q
    |||||||||| | ||||||||||||| |||  |||||||||||||||||||||||  |||||  || ||| |||||||||||||||||||||||||||||    
T  7541339 aattaatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaat 7541438  T
Q  383 atgggaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct 463  Q
    |  || | ||||||||||||| ||| ||||||||||| || |||   ||||  || ||||||| ||||||||| |||||||    
T  7541439 a-cggtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatct 7541518  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 12246624 - 12246485
Alignment:
Q  143 aactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaa 242  Q
    |||||| ||||||| ||||||||||||| ||| | ||||| ||   |||||| || ||| |||| ||||||||||||||| ||||||||||||| |||||    
T  12246624 aactaattagtcttggctataatctgttccattctactctcaatcccctttagataatcctccaaaacatctatttcaacctgctggtttttctcatcaa 12246525  T
Q  243 ccaaattcgtggccactgcaattgcagattcgatcttctc 282  Q
     |||||| |||||||| |||||||||||||||||||||||    
T  12246524 gcaaatttgtggccacagcaattgcagattcgatcttctc 12246485  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 12234233 - 12234335
Alignment:
Q  284 attaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaata 383  Q
    ||||||||||   ||||| ||||||||||| |||||||||||||||  |||||| ||||||  || ||||||||||||||||||||||||||||||||||    
T  12234233 attaatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaata 12234332  T
Q  384 tgg 386  Q
    |||    
T  12234333 tgg 12234335  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 12234069 - 12234212
Alignment:
Q  143 aactaagtagtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaa 242  Q
    |||||| || ||||||||||||| |||| ||| | ||||| |||  | || | |||||| || |||||||||||||||||||||||||| |||| |||||    
T  12234069 aactaaataatcttagctataatgtgttccatgctactctcaagccctttcagatgatcctcaagaacatctatttcaacttgctggttattctcatcaa 12234168  T
Q  243 ccaaattcgtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||| |||||   ||||||  ||||||| ||||||||||||    
T  12234169 ccaaatttgtggcagttgcaatcacagattcaatcttctcaatt 12234212  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 460
Target Start/End: Original strand, 14702523 - 14702697
Alignment:
Q  284 attaatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtcttcaata 383  Q
    ||||||||||| |||||| ||||| ||||| |||||||||||| ||| ||||||  |||||     ||| |||||||||||||||||| |||||||||||    
T  14702523 attaatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcaccactttggccttccttaggaatttcatgtcttcaata 14702622  T
Q  384 tgggaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaa 460  Q
    | || ||||||||||||||| ||| | | ||||||||||   |  ||||| ||| ||||||| ||||||||| ||||    
T  14702623 t-ggtaattctcagcttcttgaat-agccttttaatttccaaacttgacaacctttctttgtgattggttatcgtaa 14702697  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 376
Target Start/End: Complemental strand, 12259620 - 12259535
Alignment:
Q  291 tcctctttctttaaagcatttctgattttgtaaatgtagtcatccaacgcattccatggtttagccttccttaggaatttcttgtc 376  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||  || |||||  ||| ||||||||||||||||    
T  12259620 tcctcattctttaaagcatttctcattttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtc 12259535  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 14702412 - 14702482
Alignment:
Q  196 atgatcttccagaacatctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattg 266  Q
    |||||| |||||||||||||||||||| |||||||| |||| ||||| |||||| |||||||| |||||||    
T  14702412 atgatcctccagaacatctatttcaacctgctggttattctcatcaatcaaatttgtggccacagcaattg 14702482  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 12259786 - 12259651
Alignment:
Q  151 agtcttagctataatctgtttcatccaactctgaagttcctttacatgatcttccagaacatctatttcaacttgctggtttttctgatcaaccaaattc 250  Q
    |||||| |||||||| |||| ||||| ||||| |||  |||||| || ||| || ||||| ||   ||| |  |||||||| |||| |  || ||||||     
T  12259786 agtcttggctataatttgttccatcctactctcaagcccctttagataatcctcaagaacctcagcttcgagctgctggttattctcactaagcaaattt 12259687  T
Q  251 gtggccactgcaattgcagattcgatcttctcaatt 286  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12259686 gtggccactgcaattgcagattcaatcttctcaatt 12259651  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 473
Target Start/End: Original strand, 6788733 - 6788817
Alignment:
Q  389 aattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcatatt 473  Q
    |||||||||||||||||||||| ||||||||||| |||    ||| ||| ||||||||||||||||| |||||||||||||||||    
T  6788733 aattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatatt 6788817  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 27849099 - 27849023
Alignment:
Q  391 ttctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt 467  Q
    ||||||||||||| |||||||||||||||||||||   ||| | ||| ||||||||||| || ||| ||||||||||    
T  27849099 ttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaattagtaattataatctcatt 27849023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 393 - 468
Target Start/End: Original strand, 17259458 - 17259533
Alignment:
Q  393 ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc 468  Q
    ||||||||||||||||||  ||||||||| |||| | || | |||  |||||| ||||||||||||||||||||||    
T  17259458 ctcagcttctttaatcaatcttttaatttgttcagccgagaaccttcctttgtcattggttattgtaatctcattc 17259533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 468
Target Start/End: Original strand, 17267161 - 17267236
Alignment:
Q  393 ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc 468  Q
    |||||||||||||| |||  ||||||||| |||| | || | |||  |||||| ||||||||||||||||||||||    
T  17267161 ctcagcttctttaaccaatcttttaatttgttcagccgataaccttcctttgtcattggttattgtaatctcattc 17267236  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 50672316 - 50672358
Alignment:
Q  28 atggtttcagcacactgttgttggaatggtttagataacatgt 70  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  50672316 atggtttcagcacattgttgttggaatggtttagataacatgt 50672358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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