View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18529_low_3 (Length: 398)
Name: NF18529_low_3
Description: NF18529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18529_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 47986610 - 47986238
Alignment:
| Q |
13 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47986610 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
47986511 |
T |
|
| Q |
113 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgt--accacctcat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47986510 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
47986411 |
T |
|
| Q |
211 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47986410 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
47986311 |
T |
|
| Q |
311 |
aacttctgacaaataatgccgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47986310 |
aacttctgacaaataatgtcgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
47986238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 47995897 - 47995525
Alignment:
| Q |
13 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
47995897 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
47995798 |
T |
|
| Q |
113 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgt--accacctcat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
47995797 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
47995698 |
T |
|
| Q |
211 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
47995697 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
47995598 |
T |
|
| Q |
311 |
aacttctgacaaataatgccgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47995597 |
aacttctgacaaataatgtcgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
47995525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 48005184 - 48004812
Alignment:
| Q |
13 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
48005184 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
48005085 |
T |
|
| Q |
113 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgt--accacctcat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
48005084 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
48004985 |
T |
|
| Q |
211 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
48004984 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
48004885 |
T |
|
| Q |
311 |
aacttctgacaaataatgccgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48004884 |
aacttctgacaaataatgtcgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
48004812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 48014469 - 48014097
Alignment:
| Q |
13 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48014469 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
48014370 |
T |
|
| Q |
113 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgt--accacctcat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48014369 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
48014270 |
T |
|
| Q |
211 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48014269 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
48014170 |
T |
|
| Q |
311 |
aacttctgacaaataatgccgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48014169 |
aacttctgacaaataatgtcgtcagttattgacagtttacatggcacatgtgtggaagattccccacaaattt |
48014097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 5097083 - 5097213
Alignment:
| Q |
16 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaa |
115 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |
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|
| T |
5097083 |
attttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcag |
5097182 |
T |
|
| Q |
116 |
aatattccttcaaatctctcttaattcaaat |
146 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||| |
|
|
| T |
5097183 |
aacattccttcaagtctcttttaattcaaat |
5097213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 5128123 - 5128037
Alignment:
| Q |
16 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca |
102 |
Q |
| |
|
||||||||||| || | ||||||| || |||||| |||||| || ||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
5128123 |
attttggatgccttgtatgccacaaattataaggagttggaacaaactgcaagtacatcacaagtatcaattatgactacttctaca |
5128037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 5157334 - 5157248
Alignment:
| Q |
16 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca |
102 |
Q |
| |
|
||||||||||| | | ||||||| || |||| |||||||| ||| | || | |||||||||||||||||| |||||||||||||| |
|
|
| T |
5157334 |
attttggatgccctgtatgccacaaattctaagaatttggaaccaactacagctacatcacaattatcaaatgtgactacttctaca |
5157248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 5434612 - 5434649
Alignment:
| Q |
65 |
caacaacatcacaattatcaaatatgactacttctaca |
102 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5434612 |
caactacatcacaagtatcaaatatgactacttctaca |
5434649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 5097312 - 5097356
Alignment:
| Q |
198 |
tgtaccacctcatacatttgaattctttagtttatatgtctataa |
242 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
5097312 |
tgtatcacctcatgcatttgaattcttaagtgtatatgtctataa |
5097356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 5350964 - 5351000
Alignment:
| Q |
206 |
ctcatacatttgaattctttagtttatatgtctataa |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
5350964 |
ctcaaacatttgaattctttagtttataagtctataa |
5351000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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