View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18529_low_6 (Length: 243)
Name: NF18529_low_6
Description: NF18529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18529_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 54474843 - 54474702
Alignment:
| Q |
16 |
cactatgtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtacccgtacaatctattcaattcaaatacataaata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54474843 |
cactatgtccaggtttcactccatcctggtttataagcacttctagtgaagcatctccttccagtacccgtacaatctattcaattcaaatacataaata |
54474744 |
T |
|
| Q |
116 |
tatttcatgtttttgttagcatataatataactaaatatcaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54474743 |
tatttcatgtttttgttagcatataatataactaaatatcaa |
54474702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 54474652 - 54474565
Alignment:
| Q |
156 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54474652 |
aattatgttatacctgactcattcttggacgccttcttcctgagtgcctaacacaagcagaagcacaagctaccatacgtgtcatatc |
54474565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University