View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_high_1 (Length: 778)

Name: NF1852_high_1
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_high_1
NF1852_high_1
[»] chr3 (11 HSPs)
chr3 (1-374)||(36538494-36538867)
chr3 (448-736)||(36516854-36517142)
chr3 (448-736)||(36804101-36804378)
chr3 (1-108)||(36516171-36516278)
chr3 (1-108)||(36804942-36805049)
chr3 (152-284)||(36516343-36516476)
chr3 (314-365)||(36804579-36804630)
chr3 (314-365)||(36516601-36516652)
chr3 (470-514)||(36538960-36539004)
chr3 (684-732)||(36520578-36520627)
chr3 (684-736)||(36803857-36803910)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 36538494 - 36538867
Alignment:
Q  1 ttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttctatctccttgcattgatcttcttatgggcaatttgttaactaaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538494 ttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttctatctccttgcattgatcttcttatgggcaatttgttaactaaaatc 36538593  T
Q  101 aattctccttcatccacctacatctacatgtnnnnnnnnnnnnnnnnnnnntattaatcaaacattaattaatctctagctaggttgtgtacaaaaatca 200  Q
    |||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538594 aattctccttcatccacctacatctacatgtacaaaaacaacaaaacaaaatattaatcaaacattaattaatctctagctaggttgtgtacaaaaatca 36538693  T
Q  201 aaatcacatgtatgtgggaaaaaagaagaagaaaattattggacaacgtattcattcatgttatatacaccttgtatgatgaaataatgtacaaatgaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538694 aaatcacatgtatgtgggaaaaaagaagaagaaaattattggacaacgtattcattcatgttatatacaccttgtatgatgaaataatgtacaaatgaat 36538793  T
Q  301 caataccaaatataacaatgaaagaaaatgtaactagactcgagtgtattttgttgaagtgccacgtggctagc 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36538794 caataccaaatataacaatgaaagaaaatgtaactagactcgagtgtattttgttgaagtgccacgtggctagc 36538867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 448 - 736
Target Start/End: Original strand, 36516854 - 36517142
Alignment:
Q  448 gtgatattgacttgaccctgctgtaaatcttgggtccatcccgtctgacgcaataaagtttagatagcaagaatataacatttttatgtatcttgcttat 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36516854 gtgatattgacttgaccctgctgtaaatcttgggtccatcccgtctgacgcaataaagtttagatagcaagaatataacatttttatgtatcttgcttat 36516953  T
Q  548 ccgaatataacannnnnnnacatcgaattaccatattatcttgtannnnnnnnnaagtatctcttatatagattagtcattgttcagcagcagtacaaat 647  Q
    ||||||||||||       ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  36516954 ccgaatataacatttttttacatcgaattaccatattatcttgtatttttttttaagtatctcttatatagattagtcattgttcagcagcagtacaaat 36517053  T
Q  648 ttcgcactaataatatggtaattcaatgcaaaaagaaaagttatattcggatattttccatataaattagtgcaaaatttctattcgga 736  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36517054 ttcgcactaataatatggtaattcaatgcaaaaagaaaagttatattcggatattttccatataaattagtgcaaaatttctattcgga 36517142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 448 - 736
Target Start/End: Complemental strand, 36804378 - 36804101
Alignment:
Q  448 gtgatattgacttgaccctgctgtaaatcttgggtccatcccgtctgacgcaataaagtttagatagcaagaatataacatttttatgtatcttgcttat 547  Q
    ||||||||||||||||||||   |||||||||||||||| |      |||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  36804378 gtgatattgacttgaccctg---taaatcttgggtccatac------acgcaataaagtttggatagcaagaatataacatttttaagtatcttgcttat 36804288  T
Q  548 ccgaatataacannnnnnnacatcgaattaccatattatcttgtannnnnnnnnaagtatctcttatatagattagtcattgttcagcagcagtacaaat 647  Q
    ||||||||||||       ||||||||||||||||||||||||||         || |||||||||||| ||||||||||||||||  || |||| | ||    
T  36804287 ccgaatataacatttctt-acatcgaattaccatattatcttgtatttttttttaaatatctcttatatggattagtcattgttcaatagtagtaaatat 36804189  T
Q  648 ttcgcactaataatatggtaattcaatgcaaaaagaaaagttatattcggatattttccatataaattagtgcaaaatttctattcgga 736  Q
    |||||||||| |||| |||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36804188 ttcgcactaaaaatacggtaattcaacgtaaaga-aaaagatatattcggatattttccatataaattagtgcaaaatttctattcgga 36804101  T

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Target: chr3; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36516171 - 36516278
Alignment:
Q  1 ttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttctatctccttgcattgatcttcttatgggcaatttgttaactaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||    
T  36516171 ttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaattc 36516270  T
Q  101 aattctcc 108  Q
    ||||||||    
T  36516271 aattctcc 36516278  T

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Target: chr3; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36805049 - 36804942
Alignment:
Q  1 ttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttctatctccttgcattgatcttcttatgggcaatttgttaactaaaatc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||    
T  36805049 ttttatcaatgctcttgcttttgcaagacttccttctaccttctccaaatttctatcttcttgcattgatcttcttataggcaatttgttacctaaattc 36804950  T
Q  101 aattctcc 108  Q
    ||||||||    
T  36804949 aattctcc 36804942  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 152 - 284
Target Start/End: Original strand, 36516343 - 36516476
Alignment:
Q  152 tattaatcaaacattaattaatctctagctaggttgtgtacaaaaatcaaaatcacatgtatgtgggaaaaaagaagaa--gaaaattattggacaacgt 249  Q
    |||||||||||||||||||||  | ||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||  || ||||||||||||| ||    
T  36516343 tattaatcaaacattaattaacatatagctaggttgtgcacaaaa-tcaaaatcacatgtatgtgggaaagaagaaaaaaagacaattattggacaaagt 36516441  T
Q  250 attcattcatgttatatacaccttgtatgatgaaa 284  Q
    ||||||  ||  |||||||||||||||||||||||    
T  36516442 attcatctattatatatacaccttgtatgatgaaa 36516476  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 36804630 - 36804579
Alignment:
Q  314 aacaatgaaagaaaatgtaactagactcgagtgtattttgttgaagtgccac 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36804630 aacaatgaaagaaaatgtaactagactcgagtgtattttgttgaagtgccac 36804579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 36516601 - 36516652
Alignment:
Q  314 aacaatgaaagaaaatgtaactagactcgagtgtattttgttgaagtgccac 365  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  36516601 aacaatgaaagaaaatgtaactagacttaagtgtattttgttgaagtgccac 36516652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 514
Target Start/End: Original strand, 36538960 - 36539004
Alignment:
Q  470 gtaaatcttgggtccatcccgtctgacgcaataaagtttagatag 514  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  36538960 gtaaatcatgggtccatcccgtctgacgcaataaagtttggatag 36539004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 732
Target Start/End: Original strand, 36520578 - 36520627
Alignment:
Q  684 aaagttatattcggatattttccata-taaattagtgcaaaatttctatt 732  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  36520578 aaagttatatttggatattttccatattaaattagtgcaaaatttatatt 36520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 736
Target Start/End: Complemental strand, 36803910 - 36803857
Alignment:
Q  684 aaagttatattcggatattttccatat-aaattagtgcaaaatttctattcgga 736  Q
    ||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||    
T  36803910 aaagttatatttggatatttaccatattaaattagtgcaaaatttatattcgga 36803857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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