View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_10 (Length: 465)
Name: NF1852_high_10
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 447
Target Start/End: Original strand, 38932026 - 38932435
Alignment:
| Q |
29 |
tgaatcatttatatataacaaagttggttgcatttaggagtaattgttagattataattaatgttgcttactcttgggatacgatcgagttggtttagtt |
128 |
Q |
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| T |
38932026 |
tgaatgatttatatataacaaagttggttgcatttaggagtaattgttagattataattaatgttgcttactcttgggatacgatcgagttggtttagtt |
38932125 |
T |
|
| Q |
129 |
tattggaagtgtcgaggagagtgacaataataagcggggtattgccgtaattgtaggtccagtaaggaacaccaggtggaatagcaataaggtcaccctg |
228 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38932126 |
tattggaagtgtcgaggagagtgacaataataagaggggtattgccgtaattgtaggtccagtaaggaacaccaggtggaatagcaataaggtcaccctg |
38932225 |
T |
|
| Q |
229 |
tttcacataacgaaccttctggtgacgatcctgtggttgttgtggccttcctcctttttcccattgtggctcttcatatgtctctccacatcctggaatt |
328 |
Q |
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| T |
38932226 |
tttcacataacgaaccttctggtgacgatcctgtggttgttgtggccttcctcctttttcccattgtggctcttcatatgtctctccacatcctggaatt |
38932325 |
T |
|
| Q |
329 |
gccaatcccaacactcccgttcctgtgtgtacattaattgatgagataaagtacttaacaccaaagagcagtgctttagagatagataagtgaatgaagt |
428 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
38932326 |
gccaatcccaatactcccgttcctgtgtgtac----attgatgagat-aagtacttaacaccaaagagcagtgctttag----agataagtgaatgaact |
38932416 |
T |
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| Q |
429 |
aaaaaatgaacttgaacac |
447 |
Q |
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||||||| ||||||||||| |
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| T |
38932417 |
aaaaaattaacttgaacac |
38932435 |
T |
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