View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_12 (Length: 435)
Name: NF1852_high_12
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Original strand, 43003800 - 43004220
Alignment:
| Q |
7 |
gtttcctatagaaatcataatcatagccataatcatcactaggcggaggtggagattcattgccctgatcactgtaatccatcacggtgactttgacatg |
106 |
Q |
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| T |
43003800 |
gtttcctatagaaatcataatcatagccataatcatcactaggcggaggtggagattcattgccctgatcactgtaatccatcacggtgactttgacatg |
43003899 |
T |
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| Q |
107 |
gcatgcaatgccaagtgatgtacagctgctctccttgcttcttaatctgcttgtagctgcaatctcttggcacatcaaagatagaagaagaggtagcaca |
206 |
Q |
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| T |
43003900 |
gcatgcaatgccaagtgatgtacaactgctctccttgcttcttaatctgcttgtagctgcaatctcttggcacatcaaagatagaagaagaggtagcaca |
43003999 |
T |
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| Q |
207 |
atgaacataaaaataagcttagatgctctcttagtcattttatgatataatataagaaaggtgcatacgattagagtataacttcaaaagttgttaaaag |
306 |
Q |
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| T |
43004000 |
atgagcataaaaataagcttagatgctctcttagtcattttatgatataatataagaaaggtgcataagattagagtataacttcaaaagttgttaaaag |
43004099 |
T |
|
| Q |
307 |
cattgcccatttgaataatttatatgacactatgataatagcatgctcaatcttgtacaaaaggtagggaacgtactataactggtttcctataaagtaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
43004100 |
cattgcccatttgaataatttatatgacactatgataatagcatgctcaatcttgttcaaaatgtagggaacgtactataattagtttcctataaagtaa |
43004199 |
T |
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| Q |
407 |
ggcccactatatgcctatgct |
427 |
Q |
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| T |
43004200 |
ggcccactatatgactatgct |
43004220 |
T |
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