View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_13 (Length: 418)
Name: NF1852_high_13
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 33769548 - 33769166
Alignment:
| Q |
20 |
gcccaatcttctttccttttatatttgagcattatcatcattgacttgaggttcagtgcacatacacattttgtattttcttctactttctcatcatgga |
119 |
Q |
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| T |
33769548 |
gcccaatcttctttcatttgatatttgagcattatcatcattgacttgaggttcagtgcacatacacattt-gtattttcttctactttctcatcatgga |
33769450 |
T |
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| Q |
120 |
gttagaggcaagtaacggttcctcttccacatatgatagaacagcagaaatgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatct |
219 |
Q |
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| T |
33769449 |
gttagaggcaagtaacggttcctcttccacatatgatagaacagcagaagtgaaagcctttgaagaatcaaaaaccggcgtgaaaggcctcttagaatct |
33769350 |
T |
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| Q |
220 |
ggaatatgtacgacaaagatcccacgtatgtttcattctcccaatttgaacttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtcccta |
319 |
Q |
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| T |
33769349 |
ggaatatggacgacaaagatcccacgtatgtttcattctcccaatttgaacttgaactctgatcatgaaagtgaagcatcttccaagttcagtgtcccta |
33769250 |
T |
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| Q |
320 |
tcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggg |
403 |
Q |
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| T |
33769249 |
tcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaaggagtggg |
33769166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 389
Target Start/End: Complemental strand, 33772770 - 33772462
Alignment:
| Q |
90 |
ttgtattttcttctactttctcatcatgg---agttagaggcaagtaacggttcctcttccacatatgatagaacagcagaaatgaaagcctttgaagaa |
186 |
Q |
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| T |
33772770 |
ttgtattttctgcttctttatcatcatggttgagtcagaggaaaataaaagctccacttccacatatgacagggtagctgaagtgaaagcctttgaagaa |
33772671 |
T |
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| Q |
187 |
tcaaaaaccggcgtgaaaggcctcttagaatctggaatatgtacgacaaagatcccacgtatgtttcattctcccaatttgaactt------gaactctg |
280 |
Q |
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| T |
33772670 |
tcaaaagttggtgtgaaaggtctcttggaatctggaatatgtgtgacaaagatcccacgtatgttccattatcccaatttgaacttgaacatgaactcca |
33772571 |
T |
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| Q |
281 |
atcatgaaagtgaagcatcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagat |
380 |
Q |
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| T |
33772570 |
ctcatgaaagtgacccatcttccaagttcaatgtccccatcatagaccttcaaaatatacacacaaacccatgtttgcatgctgaggtacttgacaagat |
33772471 |
T |
|
| Q |
381 |
tcgaagtgc |
389 |
Q |
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||||||||| |
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| T |
33772470 |
tcgaagtgc |
33772462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 94 - 256
Target Start/End: Complemental strand, 33764633 - 33764468
Alignment:
| Q |
94 |
attttcttctactttctcatcatggagttagaggcaagtaacggttcctc---ttccacatatgatagaacagcagaaatgaaagcctttgaagaatcaa |
190 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||| | |||| ||| ||| ||||||| ||||| ||||||| |
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| T |
33764633 |
attttcttctactttctagtcatggagttagaggcaagtaacagttccaccacttccacatataacagaatagctgaagtgaaagcttttgacgaatcaa |
33764534 |
T |
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| Q |
191 |
aaaccggcgtgaaaggcctcttagaatctggaatatgtacgacaaagatcccacgtatgtttcatt |
256 |
Q |
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| T |
33764533 |
aagctggtgtaaaaggcctcgtagaatctggaacatgcgtgacaaagatcccacgtatgttccatt |
33764468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 403
Target Start/End: Complemental strand, 33764413 - 33764306
Alignment:
| Q |
296 |
catcttccaagttcagtgtccctatcatagaccttcaagatataaacactgatccatgtttacatgctgaggtacttgagaagattcgaagtgcatgcaa |
395 |
Q |
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||||||| ||||| ||||||| ||||| |||||||||||||| |||||| |||||||||| |||| ||||||| |||| || ||||| ||||||||||| |
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| T |
33764413 |
catcttcaaagttgtgtgtccccatcattgaccttcaagatatgaacactaatccatgtttgcatgttgaggtagttgacaaaattcgtagtgcatgcaa |
33764314 |
T |
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| Q |
396 |
ggagtggg |
403 |
Q |
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|||||||| |
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| T |
33764313 |
ggagtggg |
33764306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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