View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_24 (Length: 342)
Name: NF1852_high_24
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 138 - 326
Target Start/End: Original strand, 52052682 - 52052870
Alignment:
| Q |
138 |
aaggaacaggtatgtttatggactgaaagaggaggtggatgaacatgctttcttcactgaaccttctggaactataagaagtttatcagcttcttcaatg |
237 |
Q |
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| T |
52052682 |
aaggaacagatatgtttatggactgaaagaggaggtggatgaacatgctttcttcactgaaccttctggaactataagaagtttatcagcttcttcaatg |
52052781 |
T |
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| Q |
238 |
gatgattcatggcaactcacaccactcactataagctcatcttcctcttttaaacagaggaattgttctggtttatcaaatgacaatga |
326 |
Q |
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| T |
52052782 |
gatgattcatggcaactcacaccactcactataagctcatcttcctcttttaaacagaggaattgttctggtttatcaaatgacaatga |
52052870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 52052545 - 52052621
Alignment:
| Q |
1 |
taagttgtttctataagttttctgtaagtagaatagttcaaatagtccaatccaaaaaggttcatgattgtgcttac |
77 |
Q |
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| T |
52052545 |
taagttgtttctataagttttctgtaagtagaatagttcaaatagttcaatccaaaaaggttcatgattgtgcttac |
52052621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 18198905 - 18198837
Alignment:
| Q |
138 |
aaggaacaggtatgtttatggactgaaagaggaggtggatgaacatgctttcttcactgaaccttctgg |
206 |
Q |
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| T |
18198905 |
aaggaacaggtatgtgtatggacaaaaagaagaggttgatgagtatgcattcttcaaagaaccttctgg |
18198837 |
T |
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