View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_27 (Length: 331)
Name: NF1852_high_27
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 46874069 - 46873741
Alignment:
| Q |
1 |
aatcatagagctcctttgatactcaagaacccaagtattagggtctaattgcactactgaggcaccccattttggttgtatccatgaagtattggccttc |
100 |
Q |
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| T |
46874069 |
aatcatagagctcctttgatactcaagaacccaagtattagggtctaattgcactaccgaggcaccccattttggttgtatccatgaagtattggccttc |
46873970 |
T |
|
| Q |
101 |
cgaatcacatagctaacttgtccaccattccactattaaacagcaacaaaacaacataaagttagtcaacattaacatacgtatcatggacacttcagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
46873969 |
cgaatcacatagctaacttgtccaccattccactattaaacagcaacaaaacaacataaagttagtcaacattagcatatgtatcatggacacttcagat |
46873870 |
T |
|
| Q |
201 |
cgaaggtatgtccgatgcgcgactaatgcaagacacacacacgttaccaacacatacattcaattagtccattttatcaaactattattggattcaatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46873869 |
cgaaggtatgtccgatgcgcgactaatgcaagacacacacacattaccaacacatacattcaattagtccattttatcaaactattattggattcaatgc |
46873770 |
T |
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| Q |
301 |
atagtgtcatgtctagtgccacgtctgtg |
329 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
46873769 |
atagtgtcatgtctagtgccgcgtctgtg |
46873741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 41345799 - 41345835
Alignment:
| Q |
255 |
tacattcaattagtccattttatcaaactattattgg |
291 |
Q |
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| T |
41345799 |
tacattcaattagtcaattttctcaaactattattgg |
41345835 |
T |
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