View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1852_high_28 (Length: 317)
Name: NF1852_high_28
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1852_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 35399149 - 35399426
Alignment:
| Q |
17 |
ccaaccagctagctacttccattgctcaaaacacaaattaaaagaaaccttaccacttagggttttccccctcatcatcaacagatacatttggatcaac |
116 |
Q |
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| T |
35399149 |
ccaaccagctagctacttccattgctcaaaacacaaattaaaagaaaccttaccacgtagggttttccccctcatcattaacagatacatttggatcaac |
35399248 |
T |
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| Q |
117 |
aaataatagtcagttgcaaagttgatccaggattcttcaaagatataataggctttattggatcttggaaacaaaatttggctatatagcactttcttcc |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35399249 |
aaatatgagtcagttgcaaagttgatccaggattcttcaaagatataat-cgctttattggatcttggaaacaaaatttggctatatagcaccttcttcc |
35399347 |
T |
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| Q |
217 |
aatcatctgtagaagttatcttggaagtgagttgttaagcttcaccctccctcatcaatggtttgcacatatttacata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35399348 |
aatcatctgtagaagttatcttggaagtgagttgttaagcttcaccctccctcatcaatggtttgcacatatctacata |
35399426 |
T |
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