View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1852_high_31 (Length: 297)

Name: NF1852_high_31
Description: NF1852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1852_high_31
NF1852_high_31
[»] chr5 (7 HSPs)
chr5 (107-284)||(39254057-39254234)
chr5 (20-272)||(41509803-41510044)
chr5 (57-267)||(41520032-41520231)
chr5 (27-99)||(41499964-41500036)
chr5 (58-97)||(41504492-41504531)
chr5 (57-94)||(41515883-41515920)
chr5 (57-94)||(41524816-41524853)
[»] chr7 (3 HSPs)
chr7 (20-96)||(16638075-16638151)
chr7 (20-96)||(17457487-17457563)
chr7 (20-96)||(17595651-17595727)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 107 - 284
Target Start/End: Original strand, 39254057 - 39254234
Alignment:
Q  107 tacaacgtgattcttgttagagatgaagaagctgtggaaactcaaaacttagaagctaagagtatccccccgatctcgttgaagtattgcgtagagctta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39254057 tacaacgtgattcttgttagagatgaagaagctgtggaaactcaaaactcagaagctaagagtatccccccgatctcgttgaagtattgcgtagagctta 39254156  T
Q  207 taagtctgaagattttgacaatgttggaggtgttttggtgagtagagatgttgaactcagaaaccagattcaacattt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39254157 taagtctgaagattttgacaatgttggaggtgttttggtgagtagagatgttgaactcagaaaccagattcaacattt 39254234  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 41510044 - 41509803
Alignment:
Q  20 aactcattttttctaccaaagtttccatttttaagccttatcatgaacattcaacccaaaatcgaacctgggtcatcatcttccacctacaacgtgattc 119  Q
    ||||||||| ||||||||||||||  |  ||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||    
T  41510044 aactcatttcttctaccaaagtttgaacctttcacctttatcatgaacattcaacccaaaatcgaacctgggtcatcatcttcaaccaaccatgtgattc 41509945  T
Q  120 ttgttagagatgaagaagctgtggaaactcaaaacttagaagctaagagtatccccccgatctcgttgaagtattgcgtagagcttataagtctgaagat 219  Q
    |||||         |||| |||||||| | | |||||| ||| ||||| |||  ||| |||||  ||||||| |||||| ||||||||    | |||| |    
T  41509944 ttgtt---------gaaggtgtggaaaatgataacttacaagataagactat--ccctgatcttattgaagtgttgcgtggagcttatctcacagaagtt 41509856  T
Q  220 tttgacaatgttggaggtgttttggtgagtagagatgttgaactcagaaacca 272  Q
    |||||||  |||| |||||||||||||||||||||||||| ||||||| ||||    
T  41509855 tttgacagagttgaaggtgttttggtgagtagagatgttggactcagagacca 41509803  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 267
Target Start/End: Complemental strand, 41520231 - 41520032
Alignment:
Q  57 ttatcatgaacattcaacccaaaatcgaacctgggtcatcatcttccacctacaacgtgattcttgttagagatgaagaagctgtggaaactcaaaactt 156  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||  |||||||||         |||| |||||||  | | |||||    
T  41520231 ttatcatgaatattcaacccaaaatcgaacctgggtcatcatcttcaaccaaccacgacattcttgtt---------gaaggtgtggaagatgataactt 41520141  T
Q  157 agaagctaagagtatccccccgatctcgttgaagtattgcgtagagcttataagtctgaagattttgacaatgttggaggtgttttggtgagtagagatg 256  Q
    | ||| ||||| |||  ||| |||||  ||||||| |||||| ||||||||    | |||| ||||||||  |||| ||||||||||||||||| |||||    
T  41520140 acaagataagactat--ccctgatcttattgaagtgttgcgtggagcttatctcacagaagtttttgacagagttgaaggtgttttggtgagtaaagatg 41520043  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 41500036 - 41499964
Alignment:
Q  27 tttttctaccaaagtttccatttttaagccttatcatgaacattcaacccaaaatcgaacctgggtcatcatc 99  Q
    ||||||||| ||||||||||  |||   || ||||||||||||||||||||||||||||||||||||||||||    
T  41500036 tttttctactaaagtttccaactttcgaccatatcatgaacattcaacccaaaatcgaacctgggtcatcatc 41499964  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 41504531 - 41504492
Alignment:
Q  58 tatcatgaacattcaacccaaaatcgaacctgggtcatca 97  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41504531 tatcatgaacattcaacccaaaatcgaacctgggtcatca 41504492  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 41515920 - 41515883
Alignment:
Q  57 ttatcatgaacattcaacccaaaatcgaacctgggtca 94  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  41515920 ttatcatgaacattcaacccaaagttgaacctgggtca 41515883  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 41524853 - 41524816
Alignment:
Q  57 ttatcatgaacattcaacccaaaatcgaacctgggtca 94  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  41524853 ttatcatgaacattcaacccaaaactgaacctgggtca 41524816  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 16638075 - 16638151
Alignment:
Q  20 aactcattttttctaccaaagtttccatttttaagccttatcatgaacattcaacccaaaatcgaacctgggtcatc 96  Q
    |||||||||||||||| || |||| |||||||| ||||||| |||||||||||| ||||||||||||  ||||||||    
T  16638075 aactcattttttctacaaaggtttgcatttttacgccttatgatgaacattcaatccaaaatcgaacacgggtcatc 16638151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 17457563 - 17457487
Alignment:
Q  20 aactcattttttctaccaaagtttccatttttaagccttatcatgaacattcaacccaaaatcgaacctgggtcatc 96  Q
    |||||||||||||||| || |||| |||||||| ||||||| |||||||||||| ||||||||||||  ||||||||    
T  17457563 aactcattttttctacaaaggtttgcatttttacgccttatgatgaacattcaatccaaaatcgaacacgggtcatc 17457487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 17595651 - 17595727
Alignment:
Q  20 aactcattttttctaccaaagtttccatttttaagccttatcatgaacattcaacccaaaatcgaacctgggtcatc 96  Q
    |||||||||||||||| || |||| |||||||| ||||||| |||||||||||| ||||||||||||  ||||||||    
T  17595651 aactcattttttctacaaaggtttgcatttttacgccttatgatgaacattcaatccaaaatcgaacacgggtcatc 17595727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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